Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq115376 86.0 1e-11 seq112091 86.0 1e-11 seq107102 86.0 1e-11 >seq115376 Length=10371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||||||||||||||| || | || || ||||| || || || || ||||| Sbjct 7821 TCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTG 7762 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || ||||| | |||||| || ||| || || |||||||| Sbjct 7761 TCCTGAATTTTAGCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATC 7702 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||| |||||||| Sbjct 7701 GTCTTCCCAGTAAGAGTCTTCACGAAAATCTGCAT 7667 >seq112091 Length=14418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||||||||||||||| || | || || ||||| || || || || ||||| Sbjct 11865 TCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTG 11924 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || ||||| | |||||| || ||| || || |||||||| Sbjct 11925 TCCTGAATTTTAGCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATC 11984 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||| |||||||| Sbjct 11985 GTCTTCCCAGTAAGAGTCTTCACGAAAATCTGCAT 12019 >seq107102 Length=7485 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 ||||| || | ||| | |||||| |||||||||||| | | | | | || ||| Sbjct 3747 ACTAAGTGCAGAGTCGACTCTTTCTGAATATTATAATCGGCCAGTGTCCTCCCATCTTCC 3806 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || || |||||||| | ||||| ||||| || || || || || ||||| || Sbjct 3807 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGG 3866 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || ||||| || || ||||| ||| || || ||||| ||||| ||| Sbjct 3867 ATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCCAGAGTGATGGTCTTA 3926 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || || | || ||||||||| Sbjct 3927 CCGGTCAGAGTCTTGACAAAAATCTGCATT 3956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902035897885800