Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq125222 132 1e-25 seq69762 107 6e-18 seq95628 105 2e-17 seq118114 98.7 3e-15 seq122528 95.1 4e-14 seq123577 93.3 1e-13 >seq125222 Length=8193 Score = 132 bits (146), Expect = 1e-25 Identities = 220/314 (70%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | ||| || | ||| ||||| ||||| ||| || || Sbjct 729 CATAATATCCTCCATAGCCTTTACTAATCGCCTCTGGATATATCCAGTCTCAGAAGTCTT 670 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||||||||||||||||| || | ||| | ||| Sbjct 669 GACAGCAGTATCAATCAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGCGG 610 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | ||| | || | | ||| |||| || || |||| || ||| || || Sbjct 609 AGTCAACCCACGAAGATACGAGTTCTCGACAAATCCACAACTTTCTGGCCCATAATCATC 550 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCATAGCCGTATGGGATACGCTTTCCATCA 302802 || || || || ||||| || | | || | | | || | ||||| ||||| || ||| Sbjct 549 TTTTGTGAAATGGGGCAGAGTTC-GATCAATGA-ATCCAAACGGGATCCGCTTACCCTCA 492 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || |||||||| || | || | | ||||||| |||||||| | ||| ||||| || Sbjct 491 ACATTCTGCTGACCAACACAAGCAGTCATCTGAGAAATATTGATGAAACTTCCCTTAGAT 432 Query 302863 CCAGCATTTACCAT 302876 |||||| | ||||| Sbjct 431 CCAGCAGTAACCAT 418 >seq69762 Length=1982 Score = 107 bits (118), Expect = 6e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 |||||||||||| || || |||||| | |||| | | || ||||| || ||| Sbjct 530 ACACACATGGACTCTATACGCATCACTTTGGTCAAACAACCTCTCCTTGAGAAAATGAGC 589 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 || || || | |||||| ||||| | ||||| || ||||| || ||||||||||| || Sbjct 590 GGCTCCATGAGCAATCATGCAATCTCTTTCCATCTCTCCGAATCGGAGACCACCATCTCG 649 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | |||||||||||||| | || ||| | || |||||| ||| ||| Sbjct 650 AGATCGTCCCTCGGCAGGCTGCCTTGTAAGAATTTGCACAGGACCCCGACCACGGGAATG 709 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||||| ||||| |||||||| | ||| || ||| ||||| | ||| || Sbjct 710 GATCTTATCATCCACCATGTGCTTGAGTCTCTGATAATATGTTGGACCCAGGAAAAT 766 >seq95628 Length=10288 Score = 105 bits (116), Expect = 2e-17 Identities = 343/518 (66%), Gaps = 36/518 (7%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | | || || | ||| | || || || | ||| |||||| Sbjct 6370 CTATCAAATCTTCCGGGCCTAAGCAAAGCAGAGTCAAGAATGTCTGCACGGTTAGTTGCT 6429 Query 288910 GCCAATACAACAATAGATTCGG---TTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || | ||||||| ||| | ||| ||| ||| |||||||| ||| || | || Sbjct 6430 GCAA---CAACAAT-GATACCTGTATTTCCTTCAAAACCATCCATTTCTGTCAACAGCTG 6485 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtt 289023 |||||| || || ||||||||||||||| |||| | || | || | |||| Sbjct 6486 ATTAAGGGTCTGCTCCCTTTCATCATTT---CCTCCT-------CCAATTCCAGTTCCTC 6535 Query 289024 tttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG 289081 | | || |||||||||||||| |||| || | | || |||| ||| | | | | Sbjct 6536 TCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGGGAGCATTCTCTTTGG 6595 Query 289082 C--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 | ||| ||| | || | || | || || |||| |||||| |||| ||||| || Sbjct 6596 CCTTCTTGAAAAGA--TCGCGAACTCTAGAAGCACCAACACCAACGAACATCTCTACGAA 6653 Query 289140 TTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 |||||| | || | | || | |||| ||| |||||| || || | |||| | || | Sbjct 6654 CTCAGAACCTGA-AATGGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCAA 6712 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 | || || || || ||||| || || || ||| || || ||||| || | |||| Sbjct 6713 GCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCC 6772 Query 289259 CA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCA 289314 || |||| || | ||||||| | |||| ||| || || | |||| | ||| || Sbjct 6773 CAATTGCAG---TAAACCTCTCAGGTTTTTTTAGAAACTCCACCACTTCCATGAAG-TCC 6828 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || ||||||||| || || |||||| |||| || Sbjct 6829 TGCTTGGCCTCATCAACACCAGCAACATCATCAAATGT 6866 >seq118114 Length=1814 Score = 98.7 bits (108), Expect = 3e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | ||| || | ||| ||||| ||||| ||| || || Sbjct 1610 CATAATATCCTCCATAGCCTTCACTAATCGCCTCTGGATATATCCAGTCTCAGAAGTCTT 1669 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||||||||||||||||| || | ||| | ||| Sbjct 1670 GACAGCAGTATCAATCAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGCGG 1729 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 | ||| | || | | ||| |||| || || ||||| Sbjct 1730 AGTCAACCCACGAAGATACGAGTTCTCGACAAATCCACG 1768 >seq122528 Length=20092 Score = 95.1 bits (104), Expect = 4e-14 Identities = 350/540 (65%), Gaps = 20/540 (4%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | |||| ||| || ||||||||| |||| | || Sbjct 11116 CCAGCGACATCAGGCCTATCCACGGTGACCTGCCGATCAAACCTCCCAGGTCTCAACAAA 11175 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATAC---AACAATAGATTCGGTT 288933 |||| || | | ||| | |||||||| ||||||||||| ||| ||| | | Sbjct 11176 GCTGAATCAAGAACATCTGGCCTGTTTGTAGCTGCCAATACTATGACACCAGAAT---TC 11232 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | ||| |||||||| || || | ||||| | ||||| || || |||||||| Sbjct 11233 CCCGAAAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATT- 11291 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051 |||| | | ||| |||||| | | | || || ||||| || || |||| Sbjct 11292 --CCCTCCTCCAAGACC-----AGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAA 11344 Query 289052 TGAAAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 | || | | || || | ||| | | |||| | |||| || || || || | || Sbjct 11345 TAAACACAATGCAAGGTG-CTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAA 11403 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAG-CGGATACTTGAATGAATGTTAC 289169 || |||| ||| ||| ||| || |||||||| || | || | || ||| ||||| || Sbjct 11404 GCACCAACACCCACAAACAACTCCACAAATTCGGATGCCGCACACGAGAA-GAATGGCAC 11462 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 || || || || |||||||| |||| ||| ||||| || || || || || || | Sbjct 11463 GCCAGCCTCACCGGCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGGCCGAC 11522 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 | ||| || || || | ||| ||||| || | || || |||||| |||| || Sbjct 11523 AAGAAGACAACCTTTGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAA 11582 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 || || || | || | | ||| |||| || | |||| || |||||||| ||||| Sbjct 11583 GAAATCAACCACCTCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAA 11642 >seq123577 Length=33807 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 156044 AAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| ||| || |||||||||||| ||||||||||| ||||| || | ||| || || Sbjct 24786 AAAATCACCTTTTCTCTTGCCACCCCCTTGATCTACATAACGAGCTGTATCATTAAATAC 24845 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | | ||| |||| ||| ||||||||||| ||||| || || || || | ||||| Sbjct 24846 TCGCAACATTGGAACAATGCCATTGGAAGTTCCATTTGTCCCACGTATGTAACTACCAGT 24905 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | || | |||||||| | || ||||| || || | | |||| || ||| || Sbjct 24906 GGCACGGATATTATGAACAGATACACCAATCCCTCCAGCCGATTTGCTGATAACAGCACA 24965 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || | |||| | || || |||||| ||| |||| ||| Sbjct 24966 CTCTTTCAAGGTATCATATATGCCCTCAATACTATCTTCTTTCAT 25010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466650581480337