Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq109320 255 7e-62 seq4565 120 4e-21 seq106989 114 2e-19 seq82246 114 2e-19 seq159210 111 2e-18 seq101703 111 2e-18 seq107443 100 3e-15 seq91490 86.0 8e-11 >seq109320 Length=8125 Score = 255 bits (282), Expect = 7e-62 Identities = 243/311 (78%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | | ||| Sbjct 1843 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCCGAGAGCTGG 1784 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 1783 ACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 1724 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||| || |||||||||||| || |||| | |||||||| | Sbjct 1723 AAGGCGAGCACGTGGGTGACGAAATGGCGCTCGTCGGCGGTGAGGCCCTCCCAGTGGCGG 1664 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | |||||| ||||||||||||||||||| |||||||| |||| |||||| Sbjct 1663 AGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTAC 1604 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932 |||||||| | ||| |||| |||||||||| | | ||||||| ||||| | | Sbjct 1603 ATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAGCGGTCCGGGTTCGGGGCC 1544 Query 869933 AACAGGGGTTC 869943 | |||||| || Sbjct 1543 AGCAGGGGCTC 1533 Score = 176 bits (194), Expect = 5e-38 Identities = 202/272 (74%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | ||||| |||| ||| || ||||||||||| |||||| Sbjct 2122 CCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTC 2063 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||| ||| ||| Sbjct 2062 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAG 2003 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| ||||| || |||| || ||| || |||||| | |||||| Sbjct 2002 GCCAGGAGGCGCTCCGCGAAGGACTCACCGCC------GTCGATCCAGCGGAGGGCCCAG 1949 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| || | ||| || ||||||| ||| || |||||| ||||||| ||| Sbjct 1948 TCGGCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCACGGAAGAGGCGGTCCTTCTCG 1889 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | ||||||||| ||||| || | ||||| Sbjct 1888 GCGGAGTCCTTGACGTAGGTCTCCAGTAGGAG 1857 Score = 172 bits (190), Expect = 7e-37 Identities = 227/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || ||| |||||| ||||||||||| |||| |||||||| Sbjct 2437 GCCTTCTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATG 2378 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||||||||| | | | ||| ||| | || ||||||| || Sbjct 2377 AGCTCCATCCAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCACAGCCGAGCGCGCCG 2318 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||||||||| ||||||||| ||| || || ||| || |||||| || | Sbjct 2317 AGCAGCCGGTCGGCGACGAACTCGATGCACTTGCCGATCAGGTCGCTGTTCATCCCCACC 2258 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||||||| |||| || ||||| |||||| ||||||||||| | | Sbjct 2257 AGGGCGCACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACG 2198 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| ||| |||| || | |||||||| |||| || |||||| |||||||| Sbjct 2197 ATC-CCCTTCACACGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGC 2139 Query 868990 AAAGTCGCAGTG 869001 ||||||||||| Sbjct 2138 GAAGTCGCAGTG 2127 >seq4565 Length=3762 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||||| |||||||||||||| || || | | || Sbjct 364 GCTTGGCCAGCTCCCCGGGCAAGACGAGGCGGACGGCGGTCTGGATTTCCCGGGAGGTGA 423 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 424 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 483 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| |||||||||| | ||| |||| Sbjct 484 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCCGGGT 543 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 544 GGACCTGCTTCAGCACCTTGAAGATG 569 >seq106989 Length=14659 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 1479 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 1420 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 1419 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 1360 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 1359 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 1300 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 1299 GCACCTGCTTCAGCACCTTGAAGATG 1274 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| ||| | |||| ||||||| || | | Sbjct 11451 TCGAAGATGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATG 11392 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||| ||||||||| ||||| Sbjct 11391 TCAGGGTGCACCTGCTTTAGCACCTTGAAGATG 11359 >seq82246 Length=5967 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 973 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 1032 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 1033 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 1092 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 1093 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 1152 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 1153 GCACCTGCTTCAGCACCTTGAAGATG 1178 >seq159210 Length=841 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 8 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 67 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || | || || ||| || ||| | ||| |||| | Sbjct 68 TGGTAGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 127 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 128 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 187 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 188 GCACCTGCTTCAGCACCTTGAAGATG 213 >seq101703 Length=5274 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 4359 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 4300 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || | || || ||| || ||| | ||| |||| | Sbjct 4299 TGGTAGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 4240 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 4239 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 4180 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 4179 GCACCTGCTTCAGCACCTTGAAGATG 4154 >seq107443 Length=24127 Score = 100 bits (110), Expect = 3e-15 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | ||||| ||||| ||||||||||| || | | || Sbjct 17550 GCTTGGCGAGCTCCCCGGGCAGCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGA 17491 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACG-GCCGGCCTCGGTGCC-GATGCGGTCGAT 1254460 | ||| |||||| | ||||||| || | || | | | ||| | | | |||| Sbjct 17490 TGGTGGGCTTCTTGTTGTACCGCGCCAGCCGCGACGACTCCTGGGCCAGCTTC--TCGAA 17433 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||| | ||| | |||| | |||||||| | ||| || Sbjct 17432 GATGTCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTCGAGATGCCGATGTCCGG 17373 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| ||||||||| ||||| Sbjct 17372 GTGGACCTGCTTCAGCACCTTGAAGATG 17345 >seq91490 Length=3081 Score = 86.0 bits (94), Expect = 8e-11 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTA--AAAGGCCCTCACCTCTGCCACTT 869690 ||||||||| | |||||||||||||||||| |||| |||| | | || | | | | Sbjct 1356 GAGTGGATGCTATCGATGGCGATCTGGAAGTCGTAGGAAAGCGCATGACTTG-GAGAGAT 1298 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||||||||||||||| ||| | || |||||||| |||||||| |||| || || | Sbjct 1297 GGACCTCCTTCATGAAGCGGACAGCGAGGTTCTCAAGCACGATGCTGTCGGAGGTGGGAA 1238 Query 869751 -AAAAAGC 869757 ||||||| Sbjct 1237 GAAAAAGC 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6084653394793317