Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq107102 100 2e-16 seq117103 93.3 3e-14 seq115376 91.5 1e-13 seq112091 91.5 1e-13 seq64481 89.7 4e-13 seq44578 82.4 6e-11 >seq107102 Length=7485 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || |||| || || || || || | ||| ||| Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || ||| || ||| ||||| |||||| | ||| ||||| Sbjct 4352 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 4293 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| ||||| | ||| || ||||| || ||||||| || || ||||||||||||| Sbjct 4292 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 4233 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 ||| || || || || || | ||| ||||| | |||| |||||| Sbjct 4232 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACT--GAGGGG 4188 >seq117103 Length=17306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 ||||| || |||||||| || | || || || |||||||| | ||| || |||| || Sbjct 8485 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATTACTTTGGAAGTCGAGAGCTTG 8426 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || ||| ||||| ||||| |||||| | ||| |||| Sbjct 8425 --GATACCATTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATC 8368 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | |||| || || || || |||||||||| | | ||| |||||||||||| Sbjct 8367 AGCAGAGGTTGATTTTCGCCGGGAAGCAACTGGAGGATGGCCGGACACTGGCGGATTACA 8308 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| || || || Sbjct 8307 ACATTCAAAAGGAGTCAAC 8289 >seq115376 Length=10371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || | || || |||||||| ||| | || ||| | Sbjct 7894 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 7953 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||||| | | || || ||||| ||||| || || | || ||| || Sbjct 7954 AGACACTGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 8013 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| || ||||| ||||||||||||| || || | ||||| ||||| Sbjct 8014 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 8073 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || ||||| | ||| ||||| | | || || ||||| Sbjct 8074 CATTCAGAAGGAGTCTACACTCCACCTGGTGCTCCGCCTTCGTGGGGG 8121 >seq112091 Length=14418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || | || || |||||||| ||| | || ||| | Sbjct 11792 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 11733 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||||| | | || || ||||| ||||| || || | || ||| || Sbjct 11732 AGACACTGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 11673 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| || ||||| ||||||||||||| || || | ||||| ||||| Sbjct 11672 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 11613 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || ||||| | ||| ||||| | | || || ||||| Sbjct 11612 CATTCAGAAGGAGTCTACACTCCACCTGGTGCTCCGCCTTCGTGGGGG 11565 >seq64481 Length=1618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | || ||||| || || ||| |||| ||| | Sbjct 1296 ATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACTATCACCCTCGAGGTTGAGAGTTCA 1355 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | ||||| ||||| ||||| || || | ||| || || Sbjct 1356 GACACAATCGACAATGTAAAGGCCAAGATCCAAGACAAGGAGGGGATTCCCCCAGACCAG 1415 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 1416 CAAAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACCTTGGCTGATTACAAC 1475 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || ||||| || ||||| |||| Sbjct 1476 ATCCAGAAGGAATCGACCCTGCACTTGGT 1504 >seq44578 Length=5095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| ||||| ||| | || |||| | Sbjct 1277 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 1218 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 1217 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1158 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||| | | |||| |||||||||||||| Sbjct 1157 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGGCGGATTACAAC 1098 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || || || || || || | ||| | ||| | | || || || ||| Sbjct 1097 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCGTCTCCGCGGTGGA 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411462962050493