Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq109320 206 4e-47 seq4565 174 2e-37 seq101703 165 1e-34 seq106989 159 5e-33 seq82246 159 5e-33 seq107443 145 1e-28 seq159210 125 1e-22 >seq109320 Length=8125 Score = 206 bits (228), Expect = 4e-47 Identities = 240/324 (74%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | ||||| ||| ||| || ||||||||||| |||||| Sbjct 2122 CCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTC 2063 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||| ||| ||| Sbjct 2062 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAG 2003 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | ||| ||||| || || | || ||| || |||||| | ||||| Sbjct 2002 GCCAGGAGGCGCTCCGCGAAGGACTCACCGCCGTC------GATCCAGCGGAGGGCCCAG 1949 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | || || ||||||| ||| || |||||| ||||||||||| Sbjct 1948 TCGGCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCACGGAAGAGGCGGTCCTTCTCG 1889 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | ||||||||||||||| || | ||||| ||| |||| ||||||||||| ||| Sbjct 1888 GCGGAGTCCTTGACGTAGGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTCG 1829 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 ||||||||||||||||| || ||| Sbjct 1828 ATGGCGATCTGGAAGCCGTAGAAG 1805 Score = 197 bits (218), Expect = 2e-44 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | | ||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 1799 GGCCTCCGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCC 1740 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||| ||||| ||| || || ||||||||| || |||| Sbjct 1739 GTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAATGGCGCTCGTCGGCGGTGAG 1680 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||||| ||| | |||||||||||||||||||||||| |||||||| Sbjct 1679 GCCCTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGC 1620 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||| |||| |||||||||||||| ||| | |||| |||| ||||||| ||||| Sbjct 1619 CTCCGCCTGCTTGTACATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAGCG 1560 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| | ||||| ||||| Sbjct 1559 GTCCGGGTTCGGGGCCAGCAGGGGCTC 1533 Score = 159 bits (176), Expect = 5e-33 Identities = 227/313 (73%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || ||| |||||| ||||||||||| |||| |||||||| | ||||||| Sbjct 2428 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 2369 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC---ACCCGAGCGACGCAAGCAGG 794024 || ||||||||| ||||| || || | || || | ||||||| | ||||| Sbjct 2368 CAGTCGAACGGGTT---CGTCACGTCGTACACCTTGCCACAGCCGAGCGCGCCGAGCAGC 2312 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC- 794083 |||||||||||||| || ||| ||| || || ||| || |||||| || | || || Sbjct 2311 CGGTCGGCGACGAACTCGATGCACTTGCCGATCAGGTCGCTGTTCATCCCCACCAGGGCG 2252 Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTG 794143 ||||| ||||| |||| ||| ||||| |||||| ||||||||||| | |||| Sbjct 2251 CACGG-CAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATC-C 2194 Query 794144 CCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 ||| |||| || |||||||| |||| || |||||| |||||||| |||| Sbjct 2193 CCTTCACACGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGT 2134 Query 794203 CGCAATGCAGACC 794215 |||| || || || Sbjct 2133 CGCAGTGGAGGCC 2121 >seq4565 Length=3762 Score = 174 bits (192), Expect = 2e-37 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| ||||| |||||||||||| ||||||| || ||| ||| || Sbjct 330 TTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGCAAGACG 389 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 ||||| |||||||||||||| || |||| | ||| ||| |||||| ||| || Sbjct 390 AGGCGGACGGCGGTCTGGATTTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCG 449 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 |||||| || ||| | ||| |||| |||||||||| || ||||||||||| Sbjct 450 AGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATG 509 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||||||||| | ||| ||||| |||||||| ||||||||| Sbjct 510 CCCATGGCCTTGCTGGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCTTG 563 >seq101703 Length=5274 Score = 165 bits (182), Expect = 1e-34 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||||||||| |||| || |||||| | | Sbjct 4398 TGAACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 4339 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||||||||||||||| |||| | ||| || |||||| || Sbjct 4338 GGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTAGGCTTCTTGTTGTAGC 4279 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || ||| | ||| |||| |||||||||| || ||||||| Sbjct 4278 GGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 4219 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 4218 TGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 4160 >seq106989 Length=14659 Score = 159 bits (176), Expect = 5e-33 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || ||||||||| |||| || |||||| | | || Sbjct 1515 ACTTGGTCACAGCCTTGGTCCCCTCGGACACGGCGTGCTTGGCGAGCTCGCCGGGGAGGA 1456 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || || ||||||||||||||||| |||| | ||| ||| |||||| ||| | Sbjct 1455 CGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG 1396 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | |||||| || ||| | ||| |||| |||||||||| || |||||||||| Sbjct 1395 CGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 1336 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 1335 TGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 1280 >seq82246 Length=5967 Score = 159 bits (176), Expect = 5e-33 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || ||||||||| |||| || |||||| | | || Sbjct 937 ACTTGGTCACAGCCTTGGTCCCCTCGGACACGGCGTGCTTGGCGAGCTCGCCGGGGAGGA 996 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || || ||||||||||||||||| |||| | ||| ||| |||||| ||| | Sbjct 997 CGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG 1056 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | |||||| || ||| | ||| |||| |||||||||| || |||||||||| Sbjct 1057 CGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 1116 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 1117 TGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 1172 >seq107443 Length=24127 Score = 145 bits (160), Expect = 1e-28 Identities = 179/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| || ||||||||| |||| || || ||| ||| Sbjct 17589 TGAACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCGAGCTCCCCGGGCA 17530 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| ||||||||||| |||| | ||| ||| |||||| | Sbjct 17529 GCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTACC 17470 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||||| || | || | | | ||| | | | |||| |||||||||| || ||| Sbjct 17469 GCGCCAGCCGCGACGACTCCTGGGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 17412 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||| ||| | ||| | |||||||| | ||| ||||| |||||||| |||||||| Sbjct 17411 CATGATCCCCATGGCCTTGCTCGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCTT 17352 Query 1485708 G 1485708 | Sbjct 17351 G 17351 >seq159210 Length=841 Score = 125 bits (138), Expect = 1e-22 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 1485502 ACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGG 1485561 ||||||||| |||| || |||||| | | || || || ||||||||||||||||| ||| Sbjct 1 ACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGG 60 Query 1485562 GTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGG 1485621 | | ||| || |||||| ||| || |||||| || ||| | ||| Sbjct 61 GAGGTGATGGTAGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTC 120 Query 1485622 TCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACG 1485681 |||| |||||||||| || ||||||||||| ||| | ||| ||||||| || | | Sbjct 121 TCGAAGATGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATG 180 Query 1485682 TCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || |||||||||||||| ||||||||| Sbjct 181 TCCGGGTGCACCTGCTTCAGCACCTTG 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7887099663911439