Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq115376 102 6e-17 seq112091 102 6e-17 seq117103 98.7 8e-16 seq64485 98.7 8e-16 seq64482 95.1 1e-14 seq107102 89.7 4e-13 seq44578 89.7 4e-13 seq189138 86.0 5e-12 >seq115376 Length=10371 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | ||||| |||||||| ||| | || ||| | Sbjct 7894 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 7953 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||||| | | || || |||||| || || || || | || ||| || Sbjct 7954 AGACACTGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 8013 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| |||| || ||||| ||||||||||| | | || | ||||||||||| Sbjct 8014 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 8073 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| ||||| Sbjct 8074 CATTCAGAAGGAGTCTACACTCCACCTGGTG 8104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AGGCTGG 107614 |||||||||||||| || ||| | || ||||| || || ||| |||| || | ||| Sbjct 6983 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCT-C 7041 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || ||| ||| || || || |||||| | || || || Sbjct 7042 CGACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 7101 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || |||||||| || | | ||| |||| || || || Sbjct 7102 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAA 7161 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| ||||| Sbjct 7162 CATTCAGAAGGAGTCCACCCTCCACTTGGTG 7192 >seq112091 Length=14418 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | ||||| |||||||| ||| | || ||| | Sbjct 11792 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 11733 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||||| | | || || |||||| || || || || | || ||| || Sbjct 11732 AGACACTGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 11673 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| |||| || ||||| ||||||||||| | | || | ||||||||||| Sbjct 11672 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 11613 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| ||||| Sbjct 11612 CATTCAGAAGGAGTCTACACTCCACCTGGTG 11582 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AGGCTGG 107614 |||||||||||||| || ||| | || ||||| || || ||| |||| || | ||| Sbjct 12703 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCT-C 12645 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || ||| ||| || || || |||||| | || || || Sbjct 12644 CGACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 12585 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || |||||||| || | | ||| |||| || || || Sbjct 12584 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAA 12525 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| ||||| Sbjct 12524 CATTCAGAAGGAGTCCACCCTCCACTTGGTG 12494 >seq117103 Length=17306 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || |||||||| | ||| ||| ||| | Sbjct 8485 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATTACTTTGGAAGTCGAGAGCTTG 8426 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| || || |||||| | ||| ||||| Sbjct 8425 -GATACCATTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATCA 8367 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| || || || || |||||||| | | ||| ||||||| ||||| Sbjct 8366 GCAGAGGTTGATTTTCGCCGGGAAGCAACTGGAGGATGGCCGGACACTGGCGGATTACAA 8307 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||||||| || Sbjct 8306 CATTCAAAAGGAGTCAAC 8289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| || |||||| |||| || | Sbjct 8941 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACTATTACCCTCGAGGTTGAAAGTTCA 8882 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | ||||| ||| || || || ||||| | ||| | |||||| Sbjct 8881 GACACCATCGATAACGTAAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCTAGATCAG 8822 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||||| || || || ||||| | || || | || ||||||||| Sbjct 8821 CAGAGGTTGATTTTCGCGGGCAAGCAACTTGAGGATGGCAGGACGCTTGCAGACTACAAC 8762 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| || || | ||| ||||| Sbjct 8761 ATTCAAAAGGAATCCACCCTTCACTTGGTG 8732 >seq64485 Length=1617 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || || || || | ||| |||| ||| Sbjct 27 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 86 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | | || ||| || ||| || || |||||| | ||| ||||| Sbjct 87 T-GATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 145 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| ||||| | | || |||| || || | Sbjct 146 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 205 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || ||||| || | ||| |||| Sbjct 206 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 236 >seq64482 Length=1502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || || || || | ||| |||| ||| Sbjct 57 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 116 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || ||| ||| ||| || || |||||| | ||| |||| Sbjct 117 T-GACACCATCGACAATGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 175 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| ||||| | | || |||| || || | Sbjct 176 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 235 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || ||||| || | ||| |||| Sbjct 236 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 266 >seq107102 Length=7485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || ||||| || | ||| ||| ||| | Sbjct 4183 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATAACTTTGGAAGTTGAGAGCTCG 4124 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| || ||||||||| | ||| ||||| Sbjct 4123 -GATACCATTGATAATGTCAAAGCTAAGATACAGGACAAAGAAGGCATTCCCCCAGATCA 4065 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| || || || || || ||||| | | ||| ||||||| ||||| Sbjct 4064 GCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAGGATGGCCGGACACTGGCGGATTACAA 4005 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 4004 CATTCAGAAGGAGTCAAC 3987 >seq44578 Length=5095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||| ||| | || |||| ||| Sbjct 1277 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTC- 1219 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | ||| ||| || Sbjct 1218 CGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1159 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||||||||||| | ||| ||||||| ||||| Sbjct 1158 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGGCGGATTACAA 1099 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 1098 CATCCAGAAGGAGTCGACCCTTCACCTCGTG 1068 >seq189138 Length=1569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| ||| | || || ||||| || || | ||| ||| ||| Sbjct 264 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 323 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | | || ||| || ||| || || |||||| | ||| |||| Sbjct 324 T-GATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 382 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || || ||||| || || | | || |||| || || | Sbjct 383 AGCAGAGGCTTATTTTTGCTGGGAAGCAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 442 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || || || || | ||| |||| Sbjct 443 ACATCCAGAAAGAATCGACTCTTCACTTGGT 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544795924689