Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq62309 165 6e-35 seq57622 104 2e-16 seq151237 102 6e-16 seq23822 100 2e-15 seq83431 91.5 1e-12 >seq62309 Length=3049 Score = 165 bits (182), Expect = 6e-35 Identities = 605/926 (65%), Gaps = 36/926 (4%) Strand=Plus/Minus Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 ||||||||| ||| |||||| ||| ||| ||| || || || || || | || ||| Sbjct 1146 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTGTCCGAGTAGGTGGAGAACACT 1087 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACC 281673 || || || || || |||||||| ||||| | ||||| | ||| Sbjct 1086 TGTTCCTTCTTGGTGGGGATAGTGGTGTTTCTTGGGATCAACACA----GTCATGACACC 1031 Query 281674 ACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TGA 281731 || || ||||| | ||||||||| || || |||||||| | | |||||| | || Sbjct 1030 TCCCGCAGTTTCCAGACCAAGAGAGAGGGGTGTGACATCCAGCA--ACAATAGATCCTGG 973 Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | || |||| | ||| | ||| || ||||||| || || ||||| || ||| Sbjct 972 ACCTTCTCATTGCCCTCGCCACTCAAAATTGCAGCTTGAACGGCTGCGCCATAAGCCACA 913 Query 281792 GCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 ||||| ||||| || | | || || || | || || ||||| |||| || || | Sbjct 912 GCTTCGTCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA 855 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 | || ||||| || || | || || || || || | |||| || || || || Sbjct 854 -GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGACA-GT 797 Query 281909 GAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 | | || |||| |||| |||| | | || ||||| || || | || || || Sbjct 796 GCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTCCTGAA 737 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTC 282026 | ||| | || || || ||| | || | || | || | | || || || | | Sbjct 736 GAGGTCCATATTGAGCTCCTCAAATCTGGCACGGGTGATTGT-AGAGTAGAAATCCACAC 678 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTT 282083 | || |||||||||||| ||| ||||| || || ||| || || || ||| | | || Sbjct 677 CCTCATACAAAGAATCAATTTCGATCGTTGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT 619 Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAATCT 282142 || | |||||| |||||||| | ||| | |||| || | | | ||| | ||| Sbjct 618 --GCCCTTTCACAAGCTGTCCTCAATCTCC-TAAGAGCCCTCGGGTTTCCATTGATATCC 562 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 | || | ||||||||||| |||| |||| | | || | | ||||| || || Sbjct 561 TTCTTGTGCTTTCTCTTGAACTCTTGAACAAAGTGGTTCACCATTCTGTTATCGAAGTCC 502 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 ||||| || | | ||||| ||| | || || | || | ||| | || ||||||| | Sbjct 501 TCACCGCCAAGATGAGTATCTCCAGCTGTTGCCTTCACCTCGAAGATACCCTCTTCAATA 442 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | | || | ||||| || |||||||| | ||||||||| | |||||| | ||| Sbjct 441 GTTAGGAGGGACACATCGAATGTACCACCACCAAGATCAAAAATCAACACATTCTTCTCT 382 Query 282323 TTGT--CT--TGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | || ||| ||| | ||||||||||| || | || ||||||||||| ||||| Sbjct 381 CCGGAGCTGGTGGCTTTCTTGTCAAGACCATAAGCGATGGCTGCAGCAGTTGGCTCATTG 322 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 ||||| | || ||||| || |||||||| || ||||| || ||||| || || || Sbjct 321 ATAATACGCATGACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGA 262 Query 282437 GAATCGTTAAAATATGCAGGAACAGT 282462 || || ||||| || ||||| || || Sbjct 261 GAGTCATTAAAGTAGGCAGGGACTGT 236 >seq57622 Length=1978 Score = 104 bits (114), Expect = 2e-16 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| | || |||||| ||||| || ||||| || ||||| |||| ||| || || Sbjct 1878 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 1819 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || |||||||| || || ||||| || | ||| || ||||| || |||||||| Sbjct 1818 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 1759 Query 282463 AATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 |||||| || | || | | ||| || | |||||| || |||| | |||| || Sbjct 1758 AATAACAGCTTTTGAAATTGATTTCCCCAAATAAGCCTCGGCAGTTTCTCTCATCTT 1702 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 ||| |||| |||||| |||||||| || ||||| || ||| | ||||| | || || Sbjct 1878 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 1819 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 || | ||| ||| ||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 1818 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 1759 Query 86238 AATAACTGCTTT 86249 |||||| ||||| Sbjct 1758 AATAACAGCTTT 1747 >seq151237 Length=1472 Score = 102 bits (112), Expect = 6e-16 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 ||||||||||| | ||||||| ||| | |||| | || ||| || | |||| Sbjct 1287 GTTCCACCACCTAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 1343 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 |||||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 1344 CCATACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTCAGTCCAGCA 1403 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || || || || || ||||| ||||| | ||| || || || || Sbjct 1404 ATTACACCAGCGTCCTTGGTAGCTTGCCTTTGGGCATCATTGAAGTAGGC 1453 >seq23822 Length=2595 Score = 100 bits (110), Expect = 2e-15 Identities = 231/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 281383 AGTAATAGTAATATTCTTGGATTTGTTT---GTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||||||||| |||| |||| || ||| ||| |||||| | ||||| ||| || Sbjct 433 AGTAATAGTGATAT-CTTGC--TTCTTTCCAGTTCCTTTATCCACAGCAGTAACAGAGAG 489 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||| ||||||||||| | |||||| |||| |||||||||||||| |||| |||| || Sbjct 490 AATTCCATTGGCATCGATATCAAACTTGACCTCAATTTGAGGGACACCTCGAGGAGCTGG 549 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||||| || || | || | || ||| |||||||| || || | | || Sbjct 550 TGGGATACCGTCAAGGCGGAAGCTGCCGAGAGATTTATTATCCCTAACAAACTCCCTCTC 609 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 || | || | | || ||| ||||||| || | ||| | || ||| Sbjct 610 CCCTTGGAGGACATTAATCTCAACGCTAGTTTGACCGTCAGCTGCAGTAGAGAAAACTTC 669 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||||| | || | |||||||| || ||| || |||||||| | |||||| Sbjct 670 TGATTTAGAAGTCGGGAGAGTTGTGTTCCTTGGAATGATCTTGGTCATGACACCACCCAG 729 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| || ||||||||||| || || || ||||| | || ||||| Sbjct 730 TGTCTCCAAACCAAGAGATAGTGGTGTCACATCTAAAAGAACAAT 774 >seq83431 Length=17027 Score = 91.5 bits (100), Expect = 1e-12 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||| |||||||| | | |||||||| |||||||||||||| | | || Sbjct 957 TTCTTTTCAAACCCATACGCCAGCGATGCAGCAGTAGGTTCATTAATAATGCGAAGCACT 1016 Query 282392 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | |||| |||||||| | ||| |||||||| || || |||||||| || || || || Sbjct 1017 TCTAAG-CCAGCAATACGTCCAGCATCTTTTGTTGCGGTCCTTTGTGAGTCATTGAAGTA 1075 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 ||||||||||| | || || | ||||||| Sbjct 1076 AGCAGGAACAGTGACCACTGCTTTAGTTACTT 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3727178108828226