Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq32040 159 1e-34 seq243164 152 2e-32 seq4237 150 5e-32 seq4239 141 3e-29 seq72959 131 5e-26 seq48412 100 8e-17 seq79347 89.7 2e-13 >seq32040 Length=2773 Score = 159 bits (176), Expect = 1e-34 Identities = 208/285 (73%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820 ||||||||||| | |||||||| || || | | || | || | |||||| | ||| Sbjct 2260 TTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 2319 Query 19821 GCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880 | | | ||||||||| || ||||||||| |||| | || || || ||| | |||| Sbjct 2320 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTT 2379 Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| || || ||||| |||||||| || |||| || ||||| | ||||| Sbjct 2380 GGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTAC 2438 Query 19940 CCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAAC 19999 || ||||||| | || || | ||| ||||||| | || || || ||||| |||||| Sbjct 2439 CCAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 2498 Query 20000 TACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 | |||| | |||||||| || || || ||||| || ||| || || Sbjct 2499 TTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTACACG 2543 >seq243164 Length=1121 Score = 152 bits (168), Expect = 2e-32 Identities = 163/214 (76%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 20274 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 20333 ||||| | ||||| ||||| || ||||| || |||||| |||| || || | || | Sbjct 1121 TCTTC-TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 1063 Query 20334 TGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTG 20393 |||| || || || || |||||||| || ||||| ||| | | || | | ||||||| Sbjct 1062 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTG 1003 Query 20394 TCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATG 20453 | ||| |||| |||||||| ||| | ||||||||||| || || | || || ||||||| Sbjct 1002 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 943 Query 20454 AACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||| ||||||||||||||||| || ||||| || Sbjct 942 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 909 >seq4237 Length=12380 Score = 150 bits (166), Expect = 5e-32 Identities = 149/191 (78%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| ||| |||| |||| |||||| ||||| || |||||||||||||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| |||||||||| |||||| ||||||||||||| ||| | |||| || ||||| Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACT 20360 || | |||| |||| || | || || ||| ||||| ||||| || || |||||||| | Sbjct 9272 ATCTAGTTCACTGCTTTAG--GTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATT 9329 Query 20361 TTAACCAGTCC 20371 | || || ||| Sbjct 9330 TCAATCAATCC 9340 >seq4239 Length=6188 Score = 141 bits (156), Expect = 3e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| ||| |||| ||||||||||| ||||| || |||||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| |||||||||| |||||| | ||||||||||| ||||| ||||| || ||||| Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACT 20360 || | |||| || | || | || || || |||| || || || || |||||||| | Sbjct 1336 ATCTAGTTCACTACTTTAG--GTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATT 1393 Query 20361 TTAACCAGTCCCTTCTCGACAACAATGGTCGTGT 20394 | ||||| ||| | | || || | | |||||| Sbjct 1394 TCAACCAATCCGTAATTGATAATCAAGATCGTGT 1427 >seq72959 Length=7288 Score = 131 bits (144), Expect = 5e-26 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 20207 GCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCT 20266 ||||||||||| ||||| || |||||||||||||| ||| |||||||||| |||||| Sbjct 818 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 759 Query 20267 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTT 20326 |||| |||||||| | ||| ||||| || ||||| || || ||| |||| || || | Sbjct 758 TTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTATC 699 Query 20327 TCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 || ||||| || || || || |||||||| || ||||| ||| Sbjct 698 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCC 654 >seq48412 Length=5542 Score = 100 bits (110), Expect = 8e-17 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 ||||| ||||| | |||| | ||| |||| || || || ||||| || |||||||| || Sbjct 2073 GGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2014 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 |||||| | || | |||||||||||||| || | ||||||||||| ||| | ||||| Sbjct 2013 CACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATGTATGGTTC- 1955 Query 20108 CTTGTTA 20114 |||| || Sbjct 1954 CTTGGTA 1948 >seq79347 Length=11633 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||| | || || ||||| ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 649 GGTTATAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 708 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAA 20253 || || ||||| |||||||| ||| |||||| Sbjct 709 GGCCGATTGATTTTCCAATATGCTAGTTTCAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148344546524658