Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq32040 152 2e-32 seq243164 150 5e-32 seq4237 143 8e-30 seq4239 134 4e-27 seq72959 120 9e-23 seq79347 95.1 4e-15 >seq32040 Length=2773 Score = 152 bits (168), Expect = 2e-32 Identities = 204/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 28889 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 28948 ||||||||||| | |||||||| || || | | || | || | |||||| | ||| Sbjct 2260 TTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 2319 Query 28949 GCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 | || | ||||||||| || ||||||||| |||| | || || || ||| | || | Sbjct 2320 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTT 2379 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| |||||||| || ||||| || |||| |||||| | |||||| Sbjct 2380 GGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 2439 Query 29069 CATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACT 29128 || | |||||| | |||| | | |||||| | || ||||| || || ||||||| Sbjct 2440 CAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 2499 Query 29129 ACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCG 29172 |||| | || ||||| || || || ||||| || ||| || || Sbjct 2500 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTACACG 2543 >seq243164 Length=1121 Score = 150 bits (166), Expect = 5e-32 Identities = 163/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 29402 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 29461 ||||| | ||||| ||||| || ||||| || |||||| |||| || || | || | Sbjct 1121 TCTTC-TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 1063 Query 29462 TGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTG 29521 |||| || || || || ||||| || || ||||| || | | || | | ||||||| Sbjct 1062 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTG 1003 Query 29522 TCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATG 29581 | |||||||| ||||||||| || | ||||| |||||||| || | ||||| ||||||| Sbjct 1002 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 943 Query 29582 AGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | |||||||||||||||||||| || || || ||| Sbjct 942 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 908 >seq4237 Length=12380 Score = 143 bits (158), Expect = 8e-30 Identities = 147/190 (77%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 29311 GAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 ||||| |||||||| ||| |||| |||| ||||| ||||| || ||||||||||||||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 29371 GCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 29430 ||| |||||| ||| |||||| ||||||||||||| ||| | |||| || ||||| Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 29431 ATTTGGTTCGCTGCCTTGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTTAACT 29488 || | |||| |||| || | || || ||| ||||| ||||| || || ||||| || | Sbjct 9272 ATCTAGTTCACTGCTTTAG--GTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATT 9329 Query 29489 TTAACCAGTC 29498 | || || || Sbjct 9330 TCAATCAATC 9339 >seq4239 Length=6188 Score = 134 bits (148), Expect = 4e-27 Identities = 145/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 29311 GAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 ||||| |||||||| ||| |||| ||||| ||||| ||||| || |||||||||| |||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 29371 GCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 29430 ||| |||||| ||| |||||| | ||||||||||| ||||| ||||| || ||||| Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 29431 ATTTGGTTCGCTGCCTTGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTTAACT 29488 || | |||| || | || | || || || |||| || || || || ||||| || | Sbjct 1336 ATCTAGTTCACTACTTTAG--GTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATT 1393 Query 29489 TTAACCAGTC 29498 | ||||| || Sbjct 1394 TCAACCAATC 1403 >seq72959 Length=7288 Score = 120 bits (132), Expect = 9e-23 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29335 GCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCT 29394 ||||| ||||| ||||| || |||||||||||||||||| |||||| ||| |||||| Sbjct 818 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 759 Query 29395 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTT 29454 |||| |||||||| | ||| ||||| || ||||| || || ||| |||| || || | Sbjct 758 TTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTATC 699 Query 29455 TCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 || ||||| || || || || ||||| || || ||||| || Sbjct 698 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 655 >seq79347 Length=11633 Score = 95.1 bits (104), Expect = 4e-15 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||| | || || ||||| ||||| |||||||| |||||||| ||||| ||||| ||| Sbjct 649 GGTTATAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 708 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAA 29381 || || ||||| |||||||||||| |||||| Sbjct 709 GGCCGATTGATTTTCCAATATGCTAGTTTCAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146188385062346