Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq32040 188 2e-43 seq243164 158 3e-34 seq72959 107 5e-19 seq4239 104 7e-18 seq152958 102 2e-17 seq110154 89.7 1e-13 >seq32040 Length=2773 Score = 188 bits (208), Expect = 2e-43 Identities = 212/284 (75%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 18980 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19039 ||||||||||| | |||||||| || || | | || | || | |||||| | ||| Sbjct 2260 TTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 2319 Query 19040 GCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTT 19099 | || | ||||||||| || ||||||||| |||| | || || || |||||||||| Sbjct 2320 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTT 2379 Query 19100 GGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATC 19159 ||||| |||||| || |||||||||||||| || || |||| || ||| | |||| | Sbjct 2380 GGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 2439 Query 19160 CATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219 || |||||||| | ||| | | ||||||| | || ||| |||||| ||||||| Sbjct 2440 CAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 2499 Query 19220 ACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||| |||||||||||||||| || |||||||| ||| || || Sbjct 2500 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTACACG 2543 >seq243164 Length=1121 Score = 158 bits (174), Expect = 3e-34 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| || || || ||||| | || | || | ||||| ||||| ||| Sbjct 1114 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 1055 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||| | ||||| || || || ||||| ||| | |||| | | |||||||| ||| || Sbjct 1054 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 995 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 || |||||||| ||| | |||||||||||||| || | || || ||||| ||||||||| Sbjct 994 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 935 Query 19681 GCTCATAACTTCCCACTTGA 19700 |||||||||||||| || || Sbjct 934 GCTCATAACTTCCCTCTAGA 915 >seq72959 Length=7288 Score = 107 bits (118), Expect = 5e-19 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19425 TGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTC 19484 ||||||||| |||||||| || | || ||||| || || ||||||||| ||||| Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 19485 TCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGT 19544 | |||||||||| | | |||||||||||| || || || || || | || | || | Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 19545 AAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGA 19598 ||||| ||||| |||||| | ||||| || || || ||||| ||| | |||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGA 646 >seq4239 Length=6188 Score = 104 bits (114), Expect = 7e-18 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19402 GAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTAC 19461 ||||| |||||||| || | ||||||||||| |||||||| || | || |||| || Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 19462 GCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGC 19521 || ||||||||| |||||| | || ||||| | |||||||||||||| || || Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581 || | ||| | | | || | ||| |||| |||||| | ||||| || || || Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGT 19613 ||||| ||| | |||| || | | |||||| Sbjct 1396 AACCAATCCGTAATTGATAATCAAGATCGTGT 1427 >seq152958 Length=648 Score = 102 bits (112), Expect = 2e-17 Identities = 134/179 (75%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTT-ATATCGGCTGGTTTGGAACAC 18781 ||| ||| ||||| ||||||| || || || ||||||| | || || |||||||| Sbjct 645 TTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTTACATTGGATGGTTTGGTGTTT 586 Query 18782 TGATGATTCCGTGTCTCCTTGCA-GCTACTATTTGT-TTCATTATTGCCTTCATTGCTGC 18839 ||||||| || | || ||| || ||| | ||| || ||| |||||||||||||||| Sbjct 585 TGATGATCCC-TACCTTATTGATCGCAACT-TATGTATTTATTGTTGCCTTCATTGCTGC 528 Query 18840 ACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAA 18898 ||||| |||| |||||||| || || || |||||| | || ||| |||||||||| Sbjct 527 TCCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAA 469 >seq110154 Length=19990 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTT 19128 |||||||| | || || || ||||||||||||||| |||||| || |||||||||||| Sbjct 15024 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 14965 Query 19129 GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 || || || |||| || ||| | |||| ||| |||||||| Sbjct 14964 GCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 14923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140689535415858