Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq109320 405 7e-107 seq4565 145 1e-28 seq101703 140 5e-27 seq106989 136 6e-26 seq82246 136 6e-26 seq159210 114 2e-19 seq107443 114 2e-19 seq91490 96.9 5e-14 >seq109320 Length=8125 Score = 405 bits (448), Expect = 7e-107 Identities = 431/562 (77%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| | |||||| ||||||| | ||||||| |||| |||| || | Sbjct 1533 GAGCCCCTGCTGGCCCCGAACCCGGACCGCTTCTGCATGTTCCCTATCCAGTACCCGCAG 1592 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || |||| ||||||||||| ||||||||||||||||||||||| Sbjct 1593 ATCTGGGAGATGTAC-AAGCAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCT 1651 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | | ||| |||||||| | || | || |||||||||||||||| ||| || Sbjct 1652 CTCCCAGGACCTCCGCCACTGGGAGGGCCTCACCGCCGACGAGCGCCATTTCGTCACCCA 1711 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| |||||||| || ||||||| ||| |||||||| ||||||||| |||| ||||| Sbjct 1712 CGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCT 1770 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| |||||||| | | ||||| || || ||||| |||||||||||||||| Sbjct 1771 TCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 1830 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| | || ||||||||||||||| | | || Sbjct 1831 AGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGACCTACGTCAAGGACTCCGCCG 1890 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||||||| |||||| || ||| ||||||| || ||| | || |||||||||| Sbjct 1891 AGAAGGACCGCCTCTTCCGTGCCGTCGACACCGTCCCGGCCGTCGCCCGCAAGGCCGACT 1950 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGG-GCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||| | |||||| || || || | || ||| || ||||| ||| | | || Sbjct 1951 GGGCCCTCCGCTGGATCGAC--GGCGGTGAGTC----CTTCGCGGAGCGCCTCCTGGCCT 2004 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||| Sbjct 2005 TCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGA 2064 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 |||| ||||||||||| || || Sbjct 2065 AGCGGGGCCTCATGCCGGGGCT 2086 Score = 154 bits (170), Expect = 2e-31 Identities = 231/319 (72%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGACCGACGT 1456512 ||||| ||||| ||||| || |||||| || |||| ||||||||| ||| ||| Sbjct 2127 CACTGCGACTTCGCCTGCCTCCTCTACTCGCTGCTGCGGAACAAGCCGAGCGAGGAGCGT 2186 Query 1456513 GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCT 1456572 | ||| |||| | ||||||||||| |||||| ||||| ||| |||| |||| Sbjct 2187 GTG-AAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGGAGTTCGTCTGCGACGCGCT 2245 Query 1456573 GCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 |||| || || | || |||||| || ||| | || || ||| ||| || || || Sbjct 2246 GCCGTGCGCCCTGGTGGGGATGAACAGCGACC--TGATCGGCAAGTGCATCGAGTTC-GT 2302 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGG--AGAAGCACTACCGGACGGCCAACCC 1456689 ||||||||| ||||||| ||||||||||| || || | || || |||| ||||| Sbjct 2303 CGCCGACCGGCTGCTCGGCGCGCTCGGCTGTGGCAAGGTGTACGACGTGACG---AACCC 2359 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 |||| ||||||||| | |||||||| |||| ||||||||||| |||||| || || Sbjct 2360 GTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGGT 2419 Query 1456750 -GGCGAGTACGCCAAGGCC 1456767 || |||||| |||||| Sbjct 2420 CGGGGAGTACCAGAAGGCC 2438 >seq4565 Length=3762 Score = 145 bits (160), Expect = 1e-28 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | || |||| |||| |||| || Sbjct 568 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCCAGCAAGGCC 515 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 514 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 455 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || || |||||||||||||| Sbjct 454 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAAATCCAGACCGCCGTC 395 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 394 CGCCTCGTCTTGCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 343 >seq101703 Length=5274 Score = 140 bits (154), Expect = 5e-27 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 4155 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 4208 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 4209 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 4268 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| || ||| | | || ||||||||||||||||| Sbjct 4269 CGCCTCGCCCGCTACAACAAGAAGCCTACCATCACCTCCCGGGAGATCCAGACCGCCGTC 4328 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 4329 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 4380 >seq106989 Length=14659 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 1275 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 1328 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 1329 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 1388 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 1389 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 1448 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| ||||||||| |||||||| |||| Sbjct 1449 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGGACCA 1500 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 11360 ATCTTCAAGGTGCTAAAGCAGGTGCACCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 11413 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | |||||| Sbjct 11414 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAGGAGGCCTCG 11473 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| ||| ||| | | || |||||||||||||| || Sbjct 11474 AGGCTAGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCGGTC 11533 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || |||| |||||||||||| || || |||| Sbjct 11534 AGGCTCGTGCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCAGAAGGGACCA 11585 >seq82246 Length=5967 Score = 136 bits (150), Expect = 6e-26 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 1177 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 1124 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 1123 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 1064 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 1063 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 1004 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| ||||||||| |||||||| |||| Sbjct 1003 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGGACCA 952 >seq159210 Length=841 Score = 114 bits (126), Expect = 2e-19 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 212 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 159 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 158 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 99 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| || ||| | | || ||||||||||||||||| Sbjct 98 CGCCTCGCCCGCTACAACAAGAAGCCTACCATCACCTCCCGGGAGATCCAGACCGCCGTC 39 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGT 725128 || || || | | |||||| || |||| ||||||||| Sbjct 38 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGT 1 >seq107443 Length=24127 Score = 114 bits (126), Expect = 2e-19 Identities = 172/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | || |||| || | |||| || Sbjct 17346 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCGAGCAAGGCC 17399 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| | | | ||| | | | || Sbjct 17400 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGA--GAAGCTGGCCCAGGAGTCG- 17456 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| |||||||| | ||||||| ||| ||| | | || ||||||||||| ||| Sbjct 17457 TCGCGGCTGGCGCGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACGGCC 17516 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | ||| ||| || || |||| ||||||||| || |||||||||| Sbjct 17517 GTCCGCCTCGTGCTGCCCGGGGAGCTCGCCAAGCACGCCGTGTCGGAGGGCACCA 17571 >seq91490 Length=3081 Score = 96.9 bits (106), Expect = 5e-14 Identities = 147/204 (72%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 1455906 TTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGA 1455965 ||| ||| || || ||| |||||||| |||||||| || | |||||| ||||| || Sbjct 1234 TTTCTTC-CCACCTCCGACAGCATCGTGCTTGAGAACCTCGCTGTCCGCTTCATGAAGGA 1292 Query 1455966 GGTCCAATTGCCAGAGGCA--CGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 |||||| | | || || || || | |||| ||||||||||||||||| | |||| Sbjct 1293 GGTCCATCTCTCCAAGTCATGCGCTT-TCCTACGACTTCCAGATCGCCATCGATAGCATC 1351 Query 1456024 CACTCTGA----AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAA 1456079 ||||| || || ||| ||||| || | ||| | ||||||| | |||||| Sbjct 1352 CACTCCGAGGTGTACAGCCTC-CTCCTCCTCAAGACCCGCCCCAAGGACTTCGCCGAGAA 1410 Query 1456080 GGACCACCTCTTTCGCGCCATCGA 1456103 ||| ||||||||||| || ||||| Sbjct 1411 GGATCACCTCTTTCGTGCGATCGA 1434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7151383299936162