Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq123577 87.8 2e-12 seq109320 84.2 3e-11 >seq123577 Length=33807 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| ||||||| || ||| | | ||| ||||| || ||||||||||| ||||||| Sbjct 24285 CTCTCTTTCATAGTGCAAATACAACTTTTCAAATTCTTCACCCCAAACATCTGCCAATCC 24344 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||||| ||||||| | | |||||| ||| | | ||| | |||||| || Sbjct 24345 TGGAGATTCACTTGGACAGAAAAGTGACCAGTGCCCATTACTTTGAACCCTTTTCATGAA 24404 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 |||||| || | |||||| || ||| ||||| Sbjct 24405 TAGATCAGGCACCCAAAGGGCATAAAACAGATC 24437 >seq109320 Length=8125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 2144 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAG 2085 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| ||| | || || |||| Sbjct 2084 CCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCGGAGAAGA 2026 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 2025 AGATCCCCTCGAC 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684556128773640