Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq95628 120 4e-22 seq109320 116 5e-21 seq122528 105 8e-18 seq13693 102 1e-16 >seq95628 Length=10288 Score = 120 bits (132), Expect = 4e-22 Identities = 307/461 (67%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || ||||| || |||| ||| | || || || | ||||| Sbjct 6403 TCAAGAATGTCTGCACGGTTAGTTGCTGCAACAACAATGATACCTGTATTTCCTTCAAAA 6462 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||||| || || || || ||||||||| || | | Sbjct 6463 CCATCCATTTCTGTCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTC 6520 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| |||||| |||||||| ||||||| || ||||| || | Sbjct 6521 CAATTCCAGTTCCTCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGG 6580 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || ||||||||||| || ||||| |||||||| | Sbjct 6581 GAGCATTCTCTTTGGCCTTCTTGAAAAGATCGCGAACTCTAGAAGCACCAACACCAACGA 6640 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778 ||||||| || || | | | || | || || ||||| ||| || |||||| || Sbjct 6641 ACATCTCTACGAACTCAGAACCTGA--AATGGAGAAAAATGGAACACCTGCTTCACCAGC 6698 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || || || || || ||||| || ||||| ||| | |||||| | || Sbjct 6699 AATTGCCTTTGCAAGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTT 6758 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA-CAATCT 11897 ||||| || ||| || || | | ||||| |||| || ||||| |||| || | Sbjct 6759 AGGGATACGAGCCCCAATTGCAGTAAACCTCTCAGGTTTTTTTAGAAACTCCACCACTTC 6818 Query 11898 CTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | | ||| || | |||||| | |||| || |||||||| Sbjct 6819 CATGAAG-TCCTGCTTGGCCTCATCAACACCAGCAACATCA 6858 >seq109320 Length=8125 Score = 116 bits (128), Expect = 5e-21 Identities = 300/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||| ||||||||||||||||| | || ||| ||||| Sbjct 2428 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 2369 Query 122431 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCAC--CCCAACTTGTTTGAGGAG 122486 |||| || || ||| || ||| | || | || ||| || | | | ||| || Sbjct 2368 CAGTCGAACGGGTTCGTCACGTCGTACACCT---TGCCACAGCCGAGCGCGCC-GAGCAG 2313 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 || || | || |||| ||| ||| | ||| || |||||| || | ||| Sbjct 2312 CCGGTCGGCGACGAACTCGATGCACTTGCCGATCAGGTCGCTGTTCATCCCCACCAGGGC 2253 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || || || ||||| ||| |||| | ||| || || || ||||| |||||| | Sbjct 2252 GCACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCC 2193 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | | || | || | || |||| | | |||| ||| || || Sbjct 2192 CTTCACACGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTC 2133 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 |||||| ||||| || ||||| || || || || |||||| || || |||||||| Sbjct 2132 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAG 2073 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||||||||||| | ||| | || |||||||| |||||||||||||| ||||| || Sbjct 2072 GCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGAC 2013 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || || | ||||| || |||||||| Sbjct 2012 GCAGGCGAAGGCCAGGAGGCGCTCCGCGAAGGA 1980 >seq122528 Length=20092 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || ||||| |||||||||||||| || Sbjct 11238 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 11297 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | ||||||||||| ||||||||||| || ||||| || Sbjct 11298 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 11357 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || ||| | || | ||||| | || | ||| || ||||| ||||| | Sbjct 11358 AGG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 11416 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||||||||| | | || | ||| || |||||| || | ||||| | Sbjct 11417 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 11476 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | || | || | |||||||| || || || || Sbjct 11477 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 11513 >seq13693 Length=9404 Score = 102 bits (112), Expect = 1e-16 Identities = 244/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || |||||||| ||||| || ||||| | |||||| |||||||| |||||| || | | Sbjct 710 CCGTCCATCTCAGTGAGCAACTGATTCAGTGTTTGCTCTCTCTCGTCATTTCCT--CCTC 767 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| | || || ||||||||||||||||||||||| | || | Sbjct 768 CGATGCCAGTTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACCAAGCAAG 827 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| | || | | ||| || || || ||||| || || ||||| |||| Sbjct 828 GCGAATTCGCCTTCGCCTTGTTAAACAGGTCTCGCACCCTCAAAGCGCCTACACCGACAA 887 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| | || | || |||| | | ||| ||||| | ||| || |||| Sbjct 888 ACATCTCGATGAACTCTGACCCAGACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCGA 947 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| | | |||||| || || ||||| ||| | ||||| | ||| | Sbjct 948 TCGCCATGGCCAACAAGGTCTTCCCTGTCCCTGGTGGCCCCACTAGAAGAACTCCTTTTG 1007 Query 11841 GGAT-CTTGGCACCAC--TTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||| |||| |||| | |||| | |||| ||| | ||| || || |||||||||| Sbjct 1008 GGATCCTTGCTCCCACGGCTGCAAACT-TCTC-CGGCGTCCTTAAG-AACTCCACAATCT 1064 Query 11898 C 11898 | Sbjct 1065 C 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625880982549600