Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq109320 181 1e-40 seq122528 105 8e-18 >seq109320 Length=8125 Score = 181 bits (200), Expect = 1e-40 Identities = 313/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| |||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 2428 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 2369 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGA 129844 | || || |||||| | || | || |||| ||| || | | ||| || Sbjct 2368 CAGTCGAACGGGTTCGTCACGTCGTACACCTTGC---CACAGCCGAGCGCGCCGAGCAGC 2312 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | |||| |||| ||| ||| ||| ||| |||||| || | ||| Sbjct 2311 CGGTCGGCGACGAACTCGATGCACTTGCCGATCAGGTCGCTGTTCATCCCCACCAGGGCG 2252 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || |||||||| ||| |||| || ||| ||||| || || ||||||||||| | Sbjct 2251 CACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCC 2192 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024 | | |||| || || | || |||| | | |||| ||| || || Sbjct 2191 TTCACACGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCG 2132 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 |||||| |||||||| ||||||||||| || ||||||||| || || |||||||| Sbjct 2131 CAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGG 2072 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||||||||||| | |||||| || || || || ||| ||||||||||||||||| || Sbjct 2071 CCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACG 2012 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || ||||| || | ||| ||||| || ||||| Sbjct 2011 CAGGCGAAGGCCAGGAGGCGCTCCGCGAAGGA 1980 >seq122528 Length=20092 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 11238 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 11297 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || || || ||||| || || || || || Sbjct 11298 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 11357 Query 14272 TGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 ||| | ||| || || ||||| | || | |||||| ||||| ||||||| Sbjct 11358 AGGT-GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 11416 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | || || | ||| || ||| || ||| || ||||| | Sbjct 11417 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 11476 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | || | || | ||||||||||| ||||| || Sbjct 11477 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 11513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616317051709560