Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq109320 136 5e-27 seq95628 104 3e-17 seq122528 100 3e-16 seq13693 86.0 7e-12 >seq109320 Length=8125 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| || | Sbjct 1980 TCCTTCGCGGAGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGC 2039 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 2040 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 2099 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 2100 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 2129 >seq95628 Length=10288 Score = 104 bits (114), Expect = 3e-17 Identities = 305/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9614 ||||| || || | || || || || || | |||| |||||||| ||| || ||| Sbjct 6403 TCAAGAATGTCTGCACGGTTAGTTGCTGCAACAACAATGATACCTGTATTTCCTT--CAA 6460 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| |||||||| || || |||| || || |||| ||||||||| || | Sbjct 6461 AACCATCCATTTCTGTCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CC 6518 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | ||| ||||| |||||||| ||||||| || || ||||| Sbjct 6519 TCCAATTCCAGTTCCTCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCA 6578 Query 9733 TGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || | | ||| ||| ||||| || || | || || ||||||| Sbjct 6579 GGGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCGCGAACTCTAGAAGCACCAACACCAA 6637 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 | |||||||| || || | | | ||| || | || || || ||| | |||||| Sbjct 6638 CGAACATCTCTACGAACTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCA 6696 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || || || || || || || || ||||| ||| | || ||| |||| Sbjct 6697 GCAATTGCCTTTGCAAGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCC 6756 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 || || || ||| || || | |||||||||| || ||||| ||||| | | Sbjct 6757 TTAGGGATACGAGCCCCAATTGCAGTAAACCTCTCAGGTTTTTTTAGAAACTCCACCACT 6816 Query 9971 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || || || | ||||| | |||| || ||||||| Sbjct 6817 TCCATGAAGTCCTGCTTGGCCTCATCAACACCAGCAACATC 6857 >seq122528 Length=20092 Score = 100 bits (110), Expect = 3e-16 Identities = 190/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 11238 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 11297 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | ||| | ||||| ||||| ||||||||||| || || ||||| Sbjct 11298 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 11357 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||||| || || ||||| | |||| || | | || || ||||| Sbjct 11358 AGGT--GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCC 11415 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||| ||||||||| | | || | ||| || ||| || || || ||||| Sbjct 11416 ACAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCG 11475 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | || | || | ||| ||||| || || || || Sbjct 11476 GCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 11513 >seq13693 Length=9404 Score = 86.0 bits (94), Expect = 7e-12 Identities = 195/283 (69%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| | ||| | || ||||||||| || ||||||||||| || Sbjct 619 ATCAAACCTTCCTGGCCTAAGCAAGGCAGAATCAAGGATTTCGGGACGATTCGTCGCTGC 678 Query 9586 GATGACAA-CAATAC-CTGTTTC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 |||||| | || | | ||||| | | ||| |||| |||||||| || | | || || Sbjct 679 GATGACGATCACTCCACTGTTCCCACTAT---AACCGTCCATCTCAGTGAGCAACTGATT 735 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9700 | ||||| || | || ||||| || | | | | |||| | | ||| | || Sbjct 736 CAGTGTTTGCTCTCTCTCGTCATTTCCT--CCTCCGATGCCAGTTCCTCTCTGCCTCCCA 793 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 || ||||||||||||||||||||||| | ||| || || ||||| || || | || Sbjct 794 ACAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTAA 851 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 | || || || || | | ||||| ||||| ||||||||||| Sbjct 852 ACAGGTCTCGCACCCTCAAAGCGCCTACACCGACAAACATCTC 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581263124469240