Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq109320 233 2e-56 >seq109320 Length=8125 Score = 233 bits (258), Expect = 2e-56 Identities = 582/867 (67%), Gaps = 20/867 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| | ||||||| | | |||| |||| ||| | ||| | || |||||| Sbjct 1572 TTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCTGG 1631 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | |||||| || ||||| | ||||| |||| |||| Sbjct 1632 ACCGCCGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGAGGGCCTCACCGCCGAC 1691 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 |||| |||||| ||| || || ||||||||||| || || || || || | Sbjct 1692 GAGCGCCATTTCGTCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTC 1751 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || || | | | | ||| ||||| |||||| | | |||||||| | |||||| Sbjct 1752 GAGAACCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTAC 1811 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| || |||| ||||||||||||| |||| ||| | | || | Sbjct 1812 GGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGAC 1870 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGC 59920 | |||||||| | | ||||||| | || ||||||||| | || || ||| || Sbjct 1871 CTACGTCAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGTGCCGTCGACACCGTCCCGGC 1930 Query 59921 AGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCAC 59979 || | || || || |||||| | | ||||| || | || | || || || Sbjct 1931 CGTCGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGC-GGTGAGTCCTTCGCGG 1989 Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 | || ||| | || || || ||||| || || ||||||||||| ||| ||||| || | Sbjct 1990 AGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCCA 2049 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | ||||||||||| ||||| |||||||||||||| || | ||||| |||||||| || | Sbjct 2050 TCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCT 2109 Query 60100 CCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAA 60158 |||| |||||||||||||| || || || || | ||||| || | || |||| Sbjct 2110 CCCGCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACTCGCTGCT-GCGGAA 2167 Query 60159 AAATGCCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCG 60216 || ||| | | || | | | ||| || | | ||| || | ||| | | Sbjct 2168 CAA-GCCGAGCGAGGAGCGTGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGG 2226 Query 60217 AGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGA-CG 60275 ||||| || || ||||| || ||| || | || ||| || | || ||| || Sbjct 2227 AGTTCGTCTGCGACGCGCTGCCGTGCGCCCTGGTGGGGATGAAC---AGCGACCTGATCG 2283 Query 60276 --CAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAA--T 60331 ||| ||| |||| ||||| ||||| || | | | | | || || ||| | Sbjct 2284 GCAAGTGCATCGAGTTCGTCGCCGACCGGCTGCTCGGCGCGCTCGGCTGTGG--CAAGGT 2341 Query 60332 TTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAA 60391 |||| ||||| ||||| ||||||||||||||| ||||||| || | ||||||||||| Sbjct 2342 GTACGACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAA 2401 Query 60392 CTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| ||||||||||||||||| || Sbjct 2402 CTTCTTCGAGAAGCGGGTCGGGGAGTA 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546646095703440