Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq109320 149 7e-31 seq92525 84.2 2e-11 seq63897 84.2 2e-11 >seq109320 Length=8125 Score = 149 bits (164), Expect = 7e-31 Identities = 323/478 (68%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| || || |||||||| | ||| |||||||| ||| Sbjct 2101 TCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAG 2042 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||| || ||||||||| || ||||| || || ||||| | ||||| | |||||| Sbjct 2041 AAGCTGCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCCAGGAGGCGCTCCGCGAAG 1982 Query 74910 GGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC 74968 | || || ||| ||||| | ||||| || || || || ||| || ||||| Sbjct 1981 GACTCACCGCC-GTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCGACGGCCGGGAC 1923 Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028 || |||| || ||||||||| ||||||| ||| ||||||||| | || | Sbjct 1922 GGTGTCGACGGCACGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCCAG 1863 Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAG 75087 | || |||| |||| || || || |||| || ||| |||| | ||||||| | Sbjct 1862 TAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGG 1804 Query 75088 ACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGA 75147 || ||||| | | ||| || ||||| || | | ||| ||||| | ||||| Sbjct 1803 CGCGGGCCTCCGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGA 1744 Query 75148 TGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAG 75207 ||||||| ||||||||||| || || || || ||| || |||||||| ||| | | Sbjct 1743 TGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAATGGCGCTCGTCGGCGG 1684 Query 75208 TGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| ||||| | |||||| | | || | ||||||| | |||||||| Sbjct 1683 TGAGGCCCTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAA 1626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| || || |||||||||||||| | || ||||||| ||||||| Sbjct 2428 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 2369 Query 74523 CAGTCGAAAGGGTTC 74537 |||||||| |||||| Sbjct 2368 CAGTCGAACGGGTTC 2354 >seq92525 Length=6892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 3098 AGATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 3039 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||| ||| Sbjct 3038 CAACTGAGCTACGAGAGC 3021 >seq63897 Length=1327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 818 AGAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 759 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||| ||| Sbjct 758 CAACTGAGCTACGAGAGC 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545341778359800