Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq32040 170 2e-37 seq243164 154 2e-32 seq4239 102 1e-16 seq100891 87.8 2e-12 seq4237 87.8 2e-12 >seq32040 Length=2773 Score = 170 bits (188), Expect = 2e-37 Identities = 207/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 176368 GTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATC 176427 ||||| |||||| | ||||| || || || || | || |||| | |||||| | | Sbjct 2259 GTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTT 2318 Query 176428 GGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCT 176487 ||| | | ||||||||| || | |||||| |||||| | | || || ||||| ||| Sbjct 2319 GGTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCT 2378 Query 176488 TGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTAT 176547 ||||| ||||||||| || || || || | || || | || |||||| | |||| Sbjct 2379 TGGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 2438 Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||| | |||||| || ||| | ||||||||||||| || ||||| ||||| |||||| Sbjct 2439 CCAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 2498 Query 176608 TTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || ||| |||||||||| || ||||||||||| || ||| || Sbjct 2499 TTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq243164 Length=1121 Score = 154 bits (170), Expect = 2e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 |||||||| ||||| | ||| | |||| ||||| |||||||| || |||||||| ||| Sbjct 1093 ATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTC 1034 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| || || | || | ||| || ||| ||| |||| ||||| |||| Sbjct 1033 AACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAAT 974 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| ||||||||||||||||||||||| || ||||||||||| |||||||| || ||| Sbjct 973 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 914 Query 177091 CTTGCTGCTG 177100 || ||||||| Sbjct 913 CTAGCTGCTG 904 >seq4239 Length=6188 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176791 GAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 176850 ||||| || || || || ||||||| || ||||| ||||| || | ||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 176851 GCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGC 176910 ||| |||||| || || | | | ||||||||||| || || | || || || | Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 |||| ||| ||| | | ||| | ||| |||| |||||||| || |||||||| ||| Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 176971 AACCAGTCTGT 176981 ||||| || || Sbjct 1396 AACCAATCCGT 1406 >seq100891 Length=6534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 19497 TGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCCATGACAGAA 19556 |||||||| || |||||||| || |||||||| |||||||| ||| |||| ||||| ||| Sbjct 2306 TGTATTTTTTGTGGTAACTGTGTTGAGTATTGTCCAACAAATTGTTTATCAATGACTGAA 2247 Query 19557 GAATATGAATTGGCTACATTTGA 19579 ||||||||| | |||| | ||| Sbjct 2246 GAATATGAACTTTCTACTTATGA 2224 >seq4237 Length=12380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176791 GAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 176850 ||||| || || || || ||||||| | ||||| ||||| || | |||||||| ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 176851 GCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGC 176910 ||| |||||| || || | | | ||||||||||| || | | | || || | Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 |||| ||| ||||| | ||| | || ||||| || ||||| || |||||||| ||| Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 176971 AACCAGTCTGT 176981 || || || || Sbjct 9332 AATCAATCCGT 9342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601427424136320