Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq115376 104 2e-17 seq112091 104 2e-17 seq107102 91.5 1e-13 seq189138 84.2 2e-11 seq117103 84.2 2e-11 >seq115376 Length=10371 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||||||||| ||||| |||| ||||||||| | Sbjct 7667 ATGCAGATTTTCGTGAAGACTCTTACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTCT 7726 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || ||| ||||| || || ||||| |||||||| ||| |||| ||| | Sbjct 7727 GATACTGTCGACAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 7784 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || |||||| | || || | | | ||| |||| |||| Sbjct 7785 AGCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTACA 7844 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 7845 ACATCCAAAAGGA 7857 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || | || || |||||| | Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| ||||| ||||| | || ||| | Sbjct 6815 GACACAGTCGATAAT--GTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACC 6872 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| || | || | |||| ||||||| | Sbjct 6873 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATA 6932 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||| ||| | || ||||| Sbjct 6933 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 6963 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| ||||||||||| || || || | || || |||||| || Sbjct 6983 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 7042 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| |||||| ||||| ||||| | || || | Sbjct 7043 GACACAATTGATAAT--GTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACC 7100 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| || | || | |||| | ||||| | Sbjct 7101 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATA 7160 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||| ||| | || ||||| Sbjct 7161 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 7191 >seq112091 Length=14418 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||||||||| ||||| |||| ||||||||| | Sbjct 12019 ATGCAGATTTTCGTGAAGACTCTTACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTCT 11960 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || ||| ||||| || || ||||| |||||||| ||| |||| ||| | Sbjct 11959 GATACTGTCGACAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 11902 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || |||||| | || || | | | ||| |||| |||| Sbjct 11901 AGCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTACA 11842 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 11841 ACATCCAAAAGGA 11829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| ||||||||||| || || || | || || |||||| || Sbjct 12703 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 12644 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| |||||| ||||| ||||| | || || | Sbjct 12643 GACACAATTGATAAT--GTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACC 12586 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| || | || | |||| | ||||| | Sbjct 12585 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATA 12526 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||| ||| | || ||||| Sbjct 12525 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 12495 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || | || || |||||| | Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| ||||| ||||| | || ||| | Sbjct 12871 GACACAGTCGATAAT--GTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACC 12814 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| || | || | |||| ||||||| | Sbjct 12813 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATA 12754 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||| ||| | || ||||| Sbjct 12753 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 12723 >seq107102 Length=7485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || |||||||| || || | || || || ||| | Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| |||||| ||||| ||||| ||||| |||| || Sbjct 4352 CGACACCATTGACAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGAT 4295 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || ||||| || |||||| | || || | | | ||| | |||||| Sbjct 4294 CAGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTAC 4235 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| |||| | || ||||| |||| || | || ||| Sbjct 4234 AACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGGC 4184 >seq189138 Length=1569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||||||||||||| || || | || || || ||| | Sbjct 264 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 323 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| ||||| ||||| ||||| |||| || Sbjct 324 TGATACCATCGACAAT--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGAT 381 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | |||||||| || || || | || || | | | || | ||||| Sbjct 382 CAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTAGAAGATGGTAGGACTCTGGCAGATTAT 441 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||||| ||||| ||| | || |||||| ||||| Sbjct 442 AACATCCAGAAAGAATCGACTCTTCACTTGGTTCTGCGT 480 >seq117103 Length=17306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || ||||||||||| ||||| | || ||||| ||| Sbjct 8485 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATTACTTTGGAAGTCGAGAGCTTG 8426 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || ||| ||||| ||||| |||| || | Sbjct 8425 GATACCATTGATAAT--GTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATC 8368 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| ||||| ||||| || ||| |||| || | || | || | ||||||| Sbjct 8367 AGCAGAGGTTGATTTTCGCCGGGAAGCAACTGGAGGATGGCCGGACACTGGCGGATTACA 8308 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 8307 ACATTCAAAAGGAG 8294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354674037660927