Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 181 2e-40 seq417 104 5e-17 seq4 104 5e-17 seq2532 98.7 2e-15 seq10 98.7 2e-15 seq8 98.7 2e-15 seq7 98.7 2e-15 seq6 98.7 2e-15 seq3 98.7 2e-15 seq2 98.7 2e-15 >seq9 Length=39018107 Score = 181 bits (200), Expect = 2e-40 Identities = 317/460 (69%), Gaps = 1/460 (0%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || || ||||| ||| |||||| | || ||||| || || | || ||||| || Sbjct 26348049 TCCTTCGCGGAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGC 26347990 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| || ||| | || ||| Sbjct 26347989 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 26347930 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| |||||||||||| ||||| | |||| | || | || || | Sbjct 26347929 GAGCTCATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCGCTG 26347870 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || | |||||||| ||| ||| || ||| | || || || || | | Sbjct 26347869 CTGCGGAACAAGCCGAGCGAGGAGCGGGTGAAGGGGATCGTGCGGGAGGCCGTCGACATC 26347810 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT 230469 || ||||||| | || ||||| | || || ||| |||| |||||| || || Sbjct 26347809 GAGCGGGAGTTCGTCTGCGACGCGCTGCCGTGCGCCCTGGTTGGGATGAACAGCGACCTG 26347750 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||||| ||||||||||| ||||| |||||||| || | | || || || | || || Sbjct 26347749 ATGGGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGGCGCGCTCGGCTGCGGCAAG 26347690 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 |||||| || | |||||| || | | ||||||||||| ||||| || ||||||||| Sbjct 26347689 GTGTACGACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACC 26347630 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||||| ||||| ||| | || || ||| |||||| Sbjct 26347629 AACTTCTTCGAGAAGCGGGTCGGGGAGTACCAGAAGGCCT 26347590 >seq417 Length=28436 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19867 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19808 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19807 CCCACGGTGGGC 19796 >seq4 Length=41978195 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 33907132 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33907191 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 33907192 CCCACGGTGGGC 33907203 >seq2532 Length=5633 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2952 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3011 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3012 CCCACGGTGGGC 3023 >seq10 Length=39358841 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 209760 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 209701 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 209700 CCCACGGTGGGC 209689 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1881504 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1881563 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1881564 CCCACGGTGGGC 1881575 >seq8 Length=74329289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42036188 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42036129 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42036128 CCCACGGTGGGC 42036117 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42036339 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42036280 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42036279 CCCACGGTGGGC 42036268 >seq7 Length=52445601 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 35397494 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35397435 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35397434 CCCACGGTGGGC 35397423 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 47972399 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 47972458 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 47972459 CCCACGGTGGGC 47972470 >seq6 Length=53892272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4326957 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4327016 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4327017 CCCACGGTGGGC 4327028 >seq3 Length=80079441 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13754593 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13754534 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13754533 CCCACGGTGGGC 13754522 >seq2 Length=64235786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 46942223 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46942164 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 46942163 CCCACGGTGGGC 46942152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 62367996 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 62367937 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 62367936 CCCACGGTGGGC 62367925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057756897265130