Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 132 3e-26 seq7 86.0 5e-12 >seq1 Length=40297282 Score = 132 bits (146), Expect = 3e-26 Identities = 375/565 (66%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||| | ||| || || || |||| | |||||||||||| Sbjct 21353406 TGAGCATCCCCGATAACATGTACAAAATCACCGGGAGAAAGATCACAAACATGAGCAATC 21353465 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 ||||| || | |||| ||| ||||| ||| ||||||||||| || ||||| ||||| Sbjct 21353466 ATGCATGTAAGGAGAGCATAAGAAGCAACGTTGAATGGCACTCCCAATCCCATGTCAGCA 21353525 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCC--ATCACAGACATAAAATTGACTTAATA 101885 || | ||||||| |||||| || | || || | || ||||| || || || | Sbjct 21353526 GAGCGCTGATACATTTGACATGACA-ATTCCCTGTTTGCA-ACATAGAACTGTGCAAACA 21353583 Query 101886 CATGACAAGGCGGCAACACCAT--TTTAGGAATGTCTGAAACATTCCAAGCACACATTAA 101943 || ||||| || | | |||| || || || ||| |||||||||| | | || Sbjct 21353584 TGTGGCAAGGTGGAAGCGCCATCAATTTCAAA--TCAGAAGGATTCCAAGCAGAGAGTAT 21353641 Query 101944 CATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAAC 102003 || | | || || || | || || | | ||| | | || || |||| Sbjct 21353642 AATTCGACGATAATCTGGATTATTCTTAATCTTGTAAATAACATCCAACAACTGATCAAA 21353701 Query 102004 TCCTTCTCCTTTATAATC-GC--GCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCA 102060 ||||| || |||| || || || | || |||| || || ||||||| ||| Sbjct 21353702 TCCTTGGCCAGTATAGTCAGCATGCATATTAC---TATACCTAGCACCAAAATGCCGCCA 21353758 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 |||||| ||||| || ||||| | || ||||| |||| || | | |||| | Sbjct 21353759 CTGAAAACCATAAACCGGTCCCAAGTCACCTTCTTCTCGATCTCTCAGATCAAGCCCGTA 21353818 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC-AGCTGCTGATAGCTCTT 102179 | | ||||||| |||| ||||||| || || | ||| | |||| |||| Sbjct 21353819 AAGGTAGTCTCTAGATGCATTGCCATCCCATATATGAATGCCTTTTTCCTGAAGAATCTT 21353878 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 || | ||||| || || || ||||||| |||||||||||||| || | |||||||| Sbjct 21353879 GGC-ATTTGTAGAACCACTTATGAACCACAGAAGTTCTTCAACAACTCCACGCCAAAATA 21353937 Query 102240 CTCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||||||| || ||||| || || Sbjct 21353938 CTTTCTTAGTTGTCAAAAGAGGGAA 21353962 >seq7 Length=52445601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||| ||| ||||||||||| || Sbjct 29278066 ACATGAGCAATCATGCATGTAAGGAGAGCATAAGAAGCAACGTTGAATGGCACTCCCAAT 29278125 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||| ||||| || | ||||||| |||||| || Sbjct 29278126 CCCATGTCAGCAGAGCGCTGATACATTTGACATGA 29278160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361229401989701