Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq8 105 6e-18 seq6 91.5 1e-13 >seq8 Length=74329289 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 36266593 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 36266652 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | ||| |||| |||||||| || |||||||| || ||||||||| Sbjct 36266653 CAACTTGAGGATGGTAGGACTTTGGCGGATTACAACATCCAGAAGGAGTCCACTCTTCAC 36266712 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||| | ||| | | ||||| Sbjct 36266713 TTGGTGCTGCGACTGAGGGGAGG 36266735 >seq6 Length=53892272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | || | || |||||| || || ||||| | || || || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || ||||||||| | ||| |||||||||| || Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || || || ||| ||||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 43309256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428310154071905