Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq2340 89.7 1e-13 >seq2340 Length=6312 Score = 89.7 bits (98), Expect = 1e-13 Identities = 201/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 11300 TATCGACCTGAACCAGCTACCCGCACCGGATGTGGTCGAGGAGCTGGACTTTGAAAGCAT 11359 ||||||||| | ||||| ||||| ||| | ||||||||| || | ||||| ||| || Sbjct 1662 TATCGACCTCAGTCAGCTGCCCGCGCCGCAGGTGGTCGAGCAGATCGACTTCGAACAGAT 1603 Query 11360 TCTCGCTGAACGCAAGGCG-ACACTGATTTCCCTTTACCCGGAAGATCAGCAGGAGGCGG 11418 ||||| || |||||||| | | | | ||| | || | ||| |||||| | | Sbjct 1602 CCTCGCCGAGCGCAAGGCTTATGCCG-TCAGCCTATGGCCTGCGGATGAGCAGGCCGAGA 1544 Query 11419 TCGCCCGTAC-CCTGACACTGGAATCTGAGCCTCTCGTCAAACTGCTGGAAGAAAATGCT 11477 ||||| | || ||| ||||| || ||||| || ||| ||||| | || || || Sbjct 1543 TCGCC-GCACGCCTTGAGCTGGAGTCGGAGCCCATCACCAAGTTGCTGCAGGAGAACGCC 1485 Query 11478 TATCGTGAGCTTATCTGGCGTCAGCGTGTGAATGAGGCCGCACGGGCGGTGATGCTGGCC 11537 || || || | ||| ||||||||| || || || || | | ||||||||||| | Sbjct 1484 TACCGGGAAATGATCCTGCGTCAGCGGGTCAACGAAGCGTCGCTCGCGGTGATGCTCAGC 1425 Query 11538 TGTGCCGCCGGTAATGACCTTGATGTGATTGGTGCCAATTACAACACCACGCGCCTG 11594 | |||| || || ||||| || | | | | ||| | |||| || ||||||| Sbjct 1424 TCGGCCGGCGACAACGACCTGGACCAGGTCGCGGGCAACTTCAACGTCAAGCGCCTG 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107369687029410