Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq6 82.4 6e-11 >seq8 Length=74329289 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 36266593 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 36266652 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | || ||| | ||| |||| |||||||| || || ||||| || ||||||||| Sbjct 36266653 CAACTTGAGGATGGTAGGACTTTGGCGGATTACAACATCCAGAAGGAGTCCACTCTTCAC 36266712 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 ||||| | ||| | | ||||| Sbjct 36266713 TTGGTGCTGCGACTGAGGGGAGG 36266735 >seq6 Length=53892272 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || || | || | || |||||| || || ||||| | || || || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| ||||| || |||||||| | ||| |||||||||| || Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| || || || ||| ||||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 43309256 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||| ||| | || || || ||||| || |||||||| || ||| Sbjct 43309815 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 43309874 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| || || ||||||| ||||| || ||||||||||| || |||||| Sbjct 43309875 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCAC 43309934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410772012392714