Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 seq6 125 1e-23 seq8 113 7e-20 seq4 86.0 9e-12 seq7 84.2 3e-11 >seq1 Length=40297282 Score = 190 bits (210), Expect = 3e-43 Identities = 349/505 (69%), Gaps = 11/505 (2%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | || | | | |||| |||||| || ||||| || || || || Sbjct 21353456 ATGAGCAATCATGCATGTAAGGAGAGCATAAGAAGCAACGTTGAATGGCACTCCCAATCC 21353515 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAA 205568 ||| ||||| || | |||||||||||||||| | ||| | || |||| || Sbjct 21353516 CATGTCAGCAGAGCGCTGATACATTTGACATGACA---ATTCCCTGTTTGCAACATAGAA 21353572 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCAT-ATTTTCAACATCTATAGGATTCCAGG 205627 ||| |||| || |||||||| | |||| | |||||| ||| ||||||||| | Sbjct 21353573 CTGTGCAAACATGTGGCAAGGTGGAAGCGCCATCAATTTCAA-ATCAGAAGGATTCCAAG 21353631 Query 205628 CTGTTAATATTATATTTCTA-GAT--TCAGGtttattttttattttatttatAATATGTG 205684 | | | | |||| ||| | ||| || || ||||| || || || | |||| || Sbjct 21353632 CAG---AGAGTATAATTCGACGATAATCTGGATTATTCTTAATCTTGTAAATAACATCCA 21353688 Query 205685 TTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAA 205744 || |||||||||||||| ||||| | | || ||||| | |||| ||||||||| Sbjct 21353689 ACAACTGATCAAATCCTTGGCCAGTATAGTCAGCATGCATATTACTATACCTAGCACCAA 21353748 Query 205745 AATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAAC 205804 |||| ||||| |||||||||||||| || || || |||||||||| || ||| | | | Sbjct 21353749 AATGCCGCCACTGAAAACCATAAACCGGTCCCAAGTCACCTTCTTCTCGATCTCTCAGAT 21353808 Query 205805 CACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttatttt 205864 || | | | || | | ||| |||| ||||||| ||||| || ||||| | | Sbjct 21353809 CAAGCCCGTAAAGGTAGTCTCTAGATGCATTGCCATCCCATATATGAATGCCTTTTTCCT 21353868 Query 205865 ttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTC 205924 ||||| || | ||| || || ||| ||| ||||| | | ||||||||||| ||| | Sbjct 21353869 GAAGAATCTTGGCATTTGTAGAACCACTTATGAACCACAGAAGTTCTTCAACAACTCCAC 21353928 Query 205925 TCCAAAACATTGATTTTGTTGTAAA 205949 |||||| | | || ||||| || Sbjct 21353929 GCCAAAATACTTTCTTAGTTGTCAA 21353953 Score = 86.0 bits (94), Expect = 9e-12 Identities = 195/279 (70%), Gaps = 32/279 (11%) Strand=Plus/Plus Query 228239 TAAAAAATTTAATTAATTTAAA---AGAATTGGATATATCTAACA-ATTATAATATAAAT 228294 || || | |||| ||| ||||| | |||| ||| || ||| | |||| || |||| Sbjct 7092733 TATAACAATTAAATAAATTAAATTTAAAATTCGATTTAGTTAAAATATTAAAAAATAATA 7092792 Query 228295 ATTTCATCATTACCaaaaacattaatt--aaattaaatattagttcatgtaatataaaaa 228352 |||| || ||| |||| || |||| |||||| || |||||| | ||||| |||| Sbjct 7092793 ATTTAATAGTTA--AAAATAATAAATTTAAAATTACAT-TTAGTTAA---AATATTAAAA 7092846 Query 228353 atactaattttataattaa-tttagataatttGAAAGAATTAGATATATCTAGAAAT--- 228408 | | |||||||| |||||| ||||| ||| | || || || ||| || || || | Sbjct 7092847 AAA-TAATTTTAAAATTAAATTTAGTTAAAATATAAAAAATA-ATAAATTTAAAATTACA 7092904 Query 228409 TTTAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTAGGACATGT 228468 |||| | ||||||| | ||||| ||| | ||||||||| |||| | Sbjct 7092905 TTTAGTTAAAATATTAAA--------AAAATAATTT-TAAAATTAAAT-TTAGTTAAA-- 7092952 Query 228469 TATATAAAAAATACTAATTTTATAATTA-ATTTAGATAA 228506 |||||||||||| |||||||| ||||| |||||| ||| Sbjct 7092953 -ATATAAAAAATAATAATTTTAAAATTACATTTAGTTAA 7092990 >seq6 Length=53892272 Score = 125 bits (138), Expect = 1e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || || || || ||| | || | || ||| Sbjct 13065598 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 13065539 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| | ||| ||||||||| || || ||||| || || || |||| Sbjct 13065538 -TGATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 13065480 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||||||| || | || | | |||||||| Sbjct 13065479 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 13065420 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || ||||| || ||| | || |||||| | ||| Sbjct 13065419 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGT 13065382 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || ||||| ||||| || | ||| | || ||| Sbjct 13058649 ATGCAGATTTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGAGCTC- 13058591 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || |||| | ||| || || || || || || || || || || || || Sbjct 13058590 TGACACGATCGATAATGTCAAAGCAAAGATACAGGACAAGGAGGGAATCCCCCCAGACCA 13058531 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | ||||||||||| || ||| | |||||| | | ||| | | ||||| || Sbjct 13058530 ACAGCGGTTGATTTTTGCAGGGAAGCAACTTGAGGATGGCAGGACACTGGCTGATTACAA 13058471 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || |||||| | ||| | || | ||| | || ||||| || Sbjct 13058470 TATTCAAAAGGAGTCAACTCTCCATCTCGTCCTTCGTCTGCGTGGTGGGAT 13058420 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | ||| | ||| || | Sbjct 13066053 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAAAGCTCA 13065994 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || || ||||||||||| || || || || || || || Sbjct 13065993 -GACACAATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCA 13065935 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| | || || || | |||||||| Sbjct 13065934 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACCTTGGCTGATTATAA 13065875 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| | ||||||| || Sbjct 13065874 CATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGAGAGGTGGCAT 13065824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || || || || |||| |||| ||| Sbjct 43309275 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTC- 43309333 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || || ||||| ||||| || || Sbjct 43309334 TGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACCA 43309393 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||||||||| || | || || | | || | | ||| ||||| Sbjct 43309394 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGACGGGAGGACGCTTGCAGACTATAA 43309453 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| || || || || | || ||||| Sbjct 43309454 CATTCAGAAGGAGTCCACCCTCCACTTGGT 43309483 >seq8 Length=74329289 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| ||||| || || || || ||| | || |||| ||| Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| | ||| |||||||| || || ||||| || || || |||| Sbjct 36266568 C-GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 36266626 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| || |||||| | |||||| || | || || | ||||| | Sbjct 36266627 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 36266686 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || || || || ||| | || ||||| Sbjct 36266687 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 36266717 >seq4 Length=41978195 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 ||||||| |||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 33950084 TCATGAACACCACATATTGACCACATACATCCCACATAGCCATTGGGATCCCGTCCATCT 33950025 Query 202898 AT 202899 || Sbjct 33950024 AT 33950023 >seq7 Length=52445601 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 ||||||||||||| ||||| ||||||||||||||||| || || |||||||||| || || Sbjct 29278515 TAGCACCAAAATGCCGCCACTGAAAACCATAAACTGGTCCCAAGTCACCTTCTTCTCGAT 29278574 Query 205796 CATTAAAACCACGt 205809 | || | |||| || Sbjct 29278575 CTTTCAGACCAAGT 29278588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755409246716800