Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 >seq6 Length=53892272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| ||| | ||| || || || || ||||| || Sbjct 53467448 GTTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCC 53467389 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || |||||||||||||||| ||||| |||||| Sbjct 53467388 GCAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGCTGGTCCGGA 53467329 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| ||||| || || Sbjct 53467328 GGAATACCTTCCTTGTC 53467312 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || ||||| | | ||||| || | ||| |||||||| || |||||||||| Sbjct 13058651 CCTCCCCTAAGACGCAGAACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCC 13058710 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| |||| || || ||||||||||| | || |||||||| || ||| Sbjct 13058711 AGAGTCCTGCCATCTTCTAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGA 13058770 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 13058771 ATGCCTTCCTTGTCCTG 13058787 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || ||||| || |||||||||| ||||| || | ||| ||| Sbjct 13065389 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 13065448 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| ||||||||||| | || ||||||||||| ||||| ||||| || || || Sbjct 13065449 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 13065507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743480385009920