Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq7 100 2e-16 >seq1 Length=40297282 Score = 154 bits (170), Expect = 1e-32 Identities = 344/504 (68%), Gaps = 13/504 (3%) Strand=Plus/Minus Query 20055 AACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGG 20114 ||||| |||| ||||||||| || ||||||||||| | | ||||| || | || Sbjct 21353948 AACTAAGAAA---GTATTTTGGCGTGGAGTTGTTGAAGAACTTCTGTGGTTCATAAGTGG 21353892 Query 20115 ATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGG-AGCGCACATGGAT 20173 || |||||| | | ||| |||||||| || | || ||| | ||| ||| || Sbjct 21353891 TTCTACAAATGCCAAGATTCTTCAGGAAAAAGGCATTCATATATGGGATGGCA-ATGCAT 21353833 Query 20174 CTA-AG-CAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGGTC 20230 ||| || | | ||||| || | ||| ||| | | || |||| || || ||||| | Sbjct 21353832 CTAGAGACTACCTTTACGG-GC--TTGATCTGAGAGATCGAGAAGAAGGTGACTTGGGAC 21353776 Query 20231 CTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATT 20290 | || ||||| ||||| ||| | |||||||| ||| ||| | | ||| | | | | Sbjct 21353775 CGGTTTATGGTTTTCAGTGGCGGCATTTTGGTGCTAGGTATAGTAATATGCATGCTGACT 21353716 Query 20291 ATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAA 20350 || ||| |||||| | ||||| || |||||||| | ||||| | || ||| Sbjct 21353715 ATACTGGCCAAGGATTTGATCAGTTGTTGGATGTTATTTACAAGATTAAGAATAATCCAG 21353656 Query 20351 ACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGC 20410 | | | ||||||| | | || ||||| || ||| || || ||||| | | Sbjct 21353655 ATTATCGTCGAATTATACTCTCTGCTTGGAATCCTTCTGATTTGAAATTGATGGCGCTTC 21353596 Query 20411 CTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATG 20469 | || || || ||| | ||| || || || ||||| || | |||||||| ||||||||| Sbjct 21353595 CACCTTGCCACATGTT-TGCACAGTTCTATGTTGCAAACAGGGAATTGTCATGTCAAATG 21353537 Query 20470 TATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTG 20529 ||||| || || ||||| |||||| |||| || || ||||| |||| |||||| || Sbjct 21353536 TATCAGCGCTCTGCTGACATGGGATTGGGAGTGCCATTCAACGTTGCTTCTTATGCTCTC 21353477 Query 20530 CTTACGTATATGATTGCACATGTT 20553 ||||| | |||||||| |||||| Sbjct 21353476 CTTACATGCATGATTGCTCATGTT 21353453 >seq7 Length=52445601 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| || | |||||||| |||||||||||||| || || ||||| ||| Sbjct 29278187 CAGTTCTATGTTGCAAACAGGGAATTGTCATGTCAAATGTATCAGCGCTCTGCTGACATG 29278128 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| |||| || || ||||| |||| |||||| || ||||| | |||||||| ||| Sbjct 29278127 GGATTGGGAGTGCCATTCAACGTTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCAT 29278068 Query 20551 GTT 20553 ||| Sbjct 29278067 GTT 29278065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399159913112695