Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 >seq6 Length=53892272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| ||| ||||||||| | |||||||||| | Sbjct 13065143 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 13065202 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | | | | || || | ||| || || || |||||||| ||||| || || | || Sbjct 13065203 AGACTCCTACCATCCTCGAGTTGCTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGA 13065262 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | ||||||| | ||| ||||| | ||| || Sbjct 13065263 ATTCCTTCCTTGTC-CTGTATCTTCGCTTTGACGTTATCAATCGTGTCAGAACTCTCCAC 13065321 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 13065322 TTCCAAGGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCAT 13065369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| ||| ||||||||| | ||||||||| | | Sbjct 13058423 CCACCACGCAGACGAAGGACGAGATGGAGAGTTGACTCCTTTTGAATATTGTAATCAGCC 13058482 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||| || || ||||||||||| |||||||| || | || Sbjct 13058483 AGTGTCCTGCCATCCTCAAGTTGCTTCCCTGCAAAAATCAACCGCTGTTGGTCTGGGGGG 13058542 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || ||| ||| ||||||| | | | ||||| ||| ||| | Sbjct 13058543 ATTCCCTCCTTGTC-CTGTATCTTTGCTTTGACATTATCGATCGTGTC-AGAGCTCTCCA 13058600 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || || || || |||||||| ||||| Sbjct 13058601 CCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAAATCTGCAT 13058649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381346588039158