Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq8 96.9 4e-15 >seq6 Length=53892272 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| ||||| |||||||| ||| || ||| || ||||| |||||| Sbjct 43309933 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGT 43309874 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| ||||||| | |||||| || ||||| || || |||||||| |||||| Sbjct 43309873 TTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTA 43309814 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || || || || | | ||| || |||| ||| | |||||| || || Sbjct 43309813 GCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTG 43309754 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || ||||| || ||||| Sbjct 43309753 AGAGTCTTCACGAAAATCTGCAT 43309731 >seq8 Length=74329289 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | |||| || || |||| || || || || || ||||||||||| Sbjct 36266736 GCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGC 36266677 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || || || |||||||| |||||| |||| || | ||||||||| || || Sbjct 36266676 CAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGG 36266617 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| |||||| ||| | | || | ||||| | | || || Sbjct 36266616 AATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 36266557 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | |||||| || || | || || || || |||||||| Sbjct 36266556 TTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 36266509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506983022146320