Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 163 4e-35 >seq9 Length=39018107 Score = 163 bits (180), Expect = 4e-35 Identities = 579/884 (65%), Gaps = 33/884 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | || ||||| |||||||| |||| |||||||||| | Sbjct 26348459 TGTTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCT 26348400 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || ||| ||||||| | | |||||| | | || | Sbjct 26348399 GGACCGCCGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGAGGGCC---TCACCG 26348343 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | | ||| | | |||||||| |||| |||||| || |||| Sbjct 26348342 ACGGCGAGCGCCACTTCGTCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 26348283 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || ||| || || | | | || ||| | ||| | ||| || | |||| || Sbjct 26348282 TCCTCGAGAACCTCGCCGTC-CGCTTCATGAAGGAGGT--CCAGCTCTCGGAGGCC-CGC 26348227 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACT--CTAC-A 125288 || || ||||| ||||| ||| || |||||| | ||||| || |||||| || | | Sbjct 26348226 GCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTA 26348167 Query 125289 CTGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 ||| || | ||| | || ||||| | || || ||||| ||| |||| Sbjct 26348166 CTG---GAGACCTACGTCAAGGACTCCGCCGAG-AAGGACCGCCTCTTCCGCGCCGTCGA 26348111 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| || ||| | | ||||| | |||| | || |||||||| | || | Sbjct 26348110 CACCGTCCCGGCCGTCGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGA 26348051 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| | ||| || | || | || |||||| ||| ||||| |||||||| || || Sbjct 26348050 GTCCTT---CGCGGAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGG 26347994 Query 125468 TAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 || || |||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 26347993 CAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCT 26347935 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || ||||| ||||||||||| ||||| ||||| ||| || || Sbjct 26347934 CGAACGAGCTCATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT----- 26347880 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | ||| |||| | | || || | ||||| || ||| | || || | Sbjct 26347879 -CTACTCGCTGC-TGCGGA--ACAAGCCGAGCGAGGAGCGGGTGAAGGGGATCGTGCGGG 26347824 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | ||||| || || | ||||| | ||| | || ||| | | || |||| | Sbjct 26347823 AGGCCGTCGACATCGAGCGGGAGTTCGTCTGCGACGCGCTGCCGTGCGCCCTGGTTGGGA 26347764 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || ||||||| ||||| || || || || || || || | Sbjct 26347763 TGAACAGCGACCTGATGGGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGGCGCGC 26347704 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | || ||||| | ||| ||| | ||| || || || | ||| ||| || | Sbjct 26347703 TCGGCTGCGGCAAGGTGTACGACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGC 26347644 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||| ||||||||| |||| | |||||| Sbjct 26347643 TGCAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGGGAGTAC 26347600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741013337698760