Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq8 93.3 3e-14 >seq6 Length=53892272 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| || ||||||||||| || |||||||||||||| || Sbjct 13058879 CCTCCTCTCAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCA 13058938 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| |||||||| | ||||| || || ||||| ||| Sbjct 13058939 AGCGTCCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGA 13058998 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| | || |||||||| | | || || Sbjct 13058999 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCGACC 13059058 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || || || || ||||| || ||||| Sbjct 13059059 TCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13059105 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | || || || ||||||||||| || || || |||||||| || Sbjct 13065599 CCTCCTCTCAAACGTAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCA 13065658 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| |||||||| | ||||| || || ||||| ||| Sbjct 13065659 AGCGTCCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGA 13065718 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||||| ||| ||| | || |||||||| | | || || Sbjct 13065719 ATCCCTTCTTTGTCCTGAATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCCACC 13065778 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || || || || ||||| || ||||| Sbjct 13065779 TCAAGAGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13065825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-G 15193 ||||||| || | | | ||| || || ||||| || || || || ||||||||||| | Sbjct 13059333 TGCCACCCCTAAGGCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 13059392 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 | || | | | | || || | || |||||||| | || | | ||| ||||| Sbjct 13059393 CCAAG-GTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGG 13059451 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||| || ||||| || ||| ||||||| | || || || || | | || Sbjct 13059452 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTGTCAATTGTGTCTGAACTCTCG 13059511 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | ||| ||||| || || || |||||||| || || |||||||| Sbjct 13059512 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 13059561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| |||||||||||| ||| | || | || || | ||| Sbjct 13065166 ATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCCAGACTCCTACCATCCTCGAGTTG 13065225 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | ||||| || || ||||| ||||||||||| ||||| || || Sbjct 13065226 CTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGTATCTT 13065285 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || | || || || || | | || || || ||||| || || || || | Sbjct 13065286 CGCT-TTGACGTTATCAATCGTGTCAGAACTCTCCACTTCCAAGGTGATAGTCTTGCCGG 13065344 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||| Sbjct 13065345 TAAGGGTCTTCACAAAAATCTGCAT 13065369 >seq8 Length=74329289 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || || || || || || || || || |||||||| || Sbjct 36266281 TGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCG 36266222 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | || || | ||| ||||| ||| | ||||| | || || || | Sbjct 36266221 CCAGAGTTCGGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGGG 36266162 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| ||||| ||||| ||||||| | || ||||| || | |||| | Sbjct 36266161 GAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCAA 36266102 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| |||||| || || || || || || || ||||| || ||||| Sbjct 36266101 CCTCTAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 36266053 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | || | || || Sbjct 36266489 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCAAGCGTCCTGCCATCCTCA 36266430 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | ||||| | || ||||| || ||||| || ||||| Sbjct 36266429 AGTTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 36266370 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || || || | |||| || || | ||| ||||| || Sbjct 36266369 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCAACCTCAAGGGTTATGGTCTTG 36266310 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 36266309 CCAGTGAGGGTCTTCACAAAGATTTGCAT 36266281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||| || | || || ||||| ||||| || || || ||||||||||| Sbjct 36266737 TGCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCG 36266678 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | || | || || | |||||| ||||| | || | | ||| || || | Sbjct 36266677 CCAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGG 36266618 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| ||||||| || ||| | || ||||| ||| | || | Sbjct 36266617 GAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAA 36266558 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || || || || || || || ||||| |||||||| Sbjct 36266557 CTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 36266509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157345993891