Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq8 93.3 4e-14 seq5 82.4 6e-11 >seq6 Length=53892272 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || || || || ||||| |||| || | | ||||| Sbjct 13065389 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 13065448 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| | Sbjct 13065449 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 13065508 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | | ||| ||||| |||| ||| | || || || || Sbjct 13065509 ATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTCTCCACTTCCAAAGTGATTGTCTTT 13065568 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || |||||||| ||||||||| Sbjct 13065569 CCAGTAAGGGTCTTGACAAAGATTTGCATT 13065598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || || || || || || ||||| |||| || || | || || Sbjct 13058669 ACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTGCCATCTTCT 13058728 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| |||| || ||||||||||| ||| | ||| || ||||| | Sbjct 13058729 AGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 13058788 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | | ||| || || ||| ||| | || || ||||| Sbjct 13058789 ATTTTCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 13058848 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| |||||||| ||||||||| Sbjct 13058849 CCAGTAAGAGTCTTGACAAAGATTTGCATT 13058878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| || ||||| || |||| ||| || | || || || |||||||| Sbjct 43309927 GTCGATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGTTTACCA 43309868 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || || ||||| ||| || | ||||||||||| |||||| || Sbjct 43309867 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 43309808 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | |||||||||| || | || || | ||||| || || || || | ||| Sbjct 43309807 ACATTGTCGACAGTATC-AGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTGAGAGT 43309749 Query 19024 TTTGACAAAAATTTGCATT 19042 || || ||||| |||||| Sbjct 43309748 CTTCACGAAAATCTGCATT 43309730 >seq8 Length=74329289 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||||| || | | ||||| Sbjct 36266718 CACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCCTC 36266659 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || ||| | ||||| || |||||||| ||| | ||| || ||||| Sbjct 36266658 AAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 36266599 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||| || | | | | || ||| ||| ||| | || || || || Sbjct 36266598 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAAGTGATCGTCTT 36266539 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| || |||||||| ||||||||| Sbjct 36266538 CCCAGTTAGGGTCTTGACAAAGATTTGCATT 36266508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || ||||| || ||||| || ||||| |||| ||| | | || ||||| || Sbjct 36267168 GTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCCAGTGTCCTCCCATCTTCCAGTTG 36267109 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||| ||| || | |||||| || || || || Sbjct 36267108 CTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTT 36267049 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | | ||| || || | ||| || | || ||||| ||||| || Sbjct 36267048 CGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCAAGAGTGATGGTCTTACCGGT 36266989 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | ||| ||||||||||| |||||| Sbjct 36266988 CAGAGTCTTGACAAAAATCTGCATT 36266964 >seq5 Length=74729908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || || ||||||||||||| || | ||||||| Sbjct 64848826 CACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTC 64848767 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || |||||||| ||| ||| | |||||| ||||| Sbjct 64848766 CAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 64848707 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| |||| || | ||| ||||| || Sbjct 64848706 GATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTT 64848647 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 64848646 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 64848617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414547784547694