Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq8 93.3 4e-14 >seq6 Length=53892272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||| ||||| ||| ||| || ||| || Sbjct 13065389 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 13065448 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 13065449 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 13065508 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | | | | | ||| || | ||| ||||| || || || || Sbjct 13065509 ATTTTCGCTTTGACATTGTCGATGGTATC-AGAGCTCTCCACTTCCAAAGTGATTGTCTT 13065567 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || |||||||| ||||||||| Sbjct 13065568 TCCAGTAAGGGTCTTGACAAAGATTTGCATT 13065598 >seq8 Length=74329289 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || |||||| || || || || || || || ||||||||||| ||| ||| || ||| Sbjct 36266721 CAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATC 36266662 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | |||||| || ||| | |||||||| || ||||| ||| | |||||| ||||| Sbjct 36266661 CTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGGAATGCCTTCCTTGTC 36266602 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 |||||| ||| || | | ||| | ||| || | || ||||| || || | Sbjct 36266601 CTGAATTTTGGCTTTGACATTGTCAATGGTGTCG-GAGCTCTCAACTTCCAAAGTGATCG 36266543 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || || || | || |||||||| ||||||||| Sbjct 36266542 TCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 36266508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419561881977231