Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 158 3e-33 seq6 149 1e-30 seq1 118 2e-21 >seq8 Length=74329289 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | || | ||| ||||| ||||| || || ||||| Sbjct 36266282 ATGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC 36266223 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| || || || ||||| || || || ||||| | |||||| ||||| || Sbjct 36266222 GCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGG 36266163 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| || || || |||||||| || | ||| || | ||| Sbjct 36266162 GGAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 36266103 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| ||||| ||||| || || || |||||||||||||| Sbjct 36266102 ACCTCTAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 36266053 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || ||||||||||| ||||| || | || || || || || Sbjct 36267177 AAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCCAGTGTCCTCCCATC 36267118 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || || |||||||| |||||||| || || ||||| || || || ||||| Sbjct 36267117 TTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTATC 36267058 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||| || | ||| ||||| || || || || Sbjct 36267057 CTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCAAGAGTGATGGT 36266998 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || || || || ||||| ||||||||| Sbjct 36266997 CTTACCGGTCAGAGTCTTGACAAAAATCTGCATT 36266964 >seq6 Length=53892272 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || ||||| || | ||||| ||||| || ||||| ||||| ||| Sbjct 13065401 GTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCTAGCTGTTTCCCA 13065460 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 13065461 GCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTG 13065520 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| || | || || || | || || ||||| |||||||| || Sbjct 13065521 ACATTGTCGATGGTATC-AGAGCTCTCCACTTCCAAAGTGATTGTCTTTCCAGTAAGGGT 13065579 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 13065580 CTTGACAAAGATTTGCATT 13065598 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| |||||||||| ||||| || |||||||| ||||| || ||| Sbjct 13064945 GTCGACTCTTTCTGAATGTTATAGTCAGCCAGAGTCCTCCCGTCTTCGAGTTGCTTCCCA 13065004 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || || |||||||| ||||| || || Sbjct 13065005 GCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 13065064 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || ||||| || | || ||||| | || || ||||| || || || || Sbjct 13065065 ACGTTGTCGACGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAGGGTC 13065124 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 13065125 TTGACAAAGATCTGCAT 13065141 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | ||| | ||| || || |||||||| ||||| ||| Sbjct 13066052 ATGCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCA 13066111 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || || ||||| || |||||||| || || || Sbjct 13066112 GCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGG 13066171 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT-C 104508 || ||||| || || || |||||||| || |||||||| || | || || | || || | Sbjct 13066172 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCAATTGTGTC-CGAGCTTTC 13066230 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || || || |||||||||||||| Sbjct 13066231 AACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 13066281 Score = 140 bits (154), Expect = 7e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || |||||||| || |||| || || || || || Sbjct 13058437 AAGGACGAGATGGAGAGTTGACTCCTTTTGAATATTGTAATCAGCCAGTGTCCTGCCATC 13058496 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || || |||||||| | || |||||| || || || ||||| || || || Sbjct 13058497 CTCAAGTTGCTTCCCTGCAAAAATCAACCGCTGTTGGTCTGGGGGGATTCCCTCCTTGTC 13058556 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||||||||| ||||| || | || || || | || ||||| | || |||| Sbjct 13058557 CTGTATCTTTGCTTTGACATTATCGATCGTGTC-AGAGCTCTCCACCTCCAAGGTGATAG 13058615 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| |||||||| || |||||||| |||||||| Sbjct 13058616 TCTTGCCAGTAAGGGTCTTTACAAAAATCTGCAT 13058649 Score = 140 bits (154), Expect = 7e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || ||||| || | ||||| || || |||||||| || || ||| Sbjct 13058681 GTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTGCCATCTTCTAGCTGCTTCCCA 13058740 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 13058741 GCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTG 13058800 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || || || | || || || || |||||||| || Sbjct 13058801 ACATTGTCGATGGTGTC-AGAGCTCTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGAGT 13058859 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 13058860 CTTGACAAAGATTTGCATT 13058878 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| | || ||||| | || || || || || || |||||||| | Sbjct 53467447 TTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCCG 53467388 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||||| || ||||| | ||| || ||||||||||| | | ||| || || |||| Sbjct 53467387 CAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGCTGGTCCGGAG 53467328 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || ||||| || |||| || Sbjct 53467327 GAATACCTTCCTTGTCCTAAA 53467307 >seq1 Length=40297282 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||||||| || || || | || || | Sbjct 18088535 AGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCGAGGGTGCGG 18088476 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || || || || || || |||||||| || || ||||| || ||||| Sbjct 18088475 CCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCTTCC 18088416 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||| ||||| || || || || || | ||| ||| || | || ||||| || || Sbjct 18088415 TTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCCACCTCGAGCGT 18088357 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || ||||||||||| Sbjct 18088356 GATGGTTTTGCCGGTCAGGGTCTTGACGAATATCTGCAT 18088318 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | || || || ||||| | || || || ||||| ||||| || || Sbjct 18088775 ATGCCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCG 18088716 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||| || || || || || || || || |||| ||| ||||| || Sbjct 18088715 GCGAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGC 18088656 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||||||||| || || || || || | || || | || | || Sbjct 18088655 GGGATCCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTC-CGAGCTCTC 18088597 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || || ||||| Sbjct 18088596 CACCTCCAGCGTGATCGTCTTCCCAGTCAGGGTCTTGACGAAGATGTGCAT 18088546 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || || | || || | |||| || || || || || Sbjct 18088970 GTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTGCGTTCGTCCTCCAGCTGCTTCCCG 18088911 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || ||||||||||||||||| || Sbjct 18088910 GCGAAGATGAGTCGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGAATCTTTGCCTTC 18088851 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | || | || ||||| || || || ||||| || || || || Sbjct 18088850 ACGTTGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGT 18088792 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 18088791 CTTCACGAAGATCTGCAT 18088774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151325361402308