Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 >seq6 Length=53892272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| ||||| ||||| || ||||| |||| || || ||||| | | | ||||| Sbjct 19994957 CACCCCCGTTGACCCAAACCCGCCCTCGCCCCTCAGAGTCGAGTCCAAGTCCTCGACCTC 19994898 Query 5560 TTCCACATCGGGGAACGCA-GCGCG-CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | |||||||| | || | | |||| |||||||||||| || |||||||| | | Sbjct 19994897 GACGACATCGGG--AGTCATGATCTTCTCGATGATCAGCTGCGCGATCCGGTCGCCGGCC 19994840 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || || ||||||||| | | ||||||||| | ||| || || ||| | |||| Sbjct 19994839 TTCACTTCGAAATCGACATCAGAGTGGTTGAACAGGATCACCCCGACCGGGCCTCTGTAG 19994780 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 || || || |||||||| || || |||||||| | ||||| ||||| ||| || Sbjct 19994779 TCCGCATCGATCACGCCGGCACCAACGTCGATCGAATGCTTCCACGCCAAGCCAGA 19994724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430028450383112