Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq8 84.2 2e-11 >seq1 Length=40297282 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| | || | ||| || || |||||| |||||||||||||| || Sbjct 18075677 ACCCCCGCGAAGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 18075618 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | ||||||||| || || Sbjct 18075617 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 18075558 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 18075557 GATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCC 18075500 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || || || ||||| || |||||||| Sbjct 18075499 ACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 18075450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| || | || |||| || |||||||| ||| || | Sbjct 18088509 CTCCTTCTGAATGTTGTAATCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18088450 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | | |||||||||| || || ||||| | Sbjct 18088449 GATGAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTT 18088390 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||| ||||| || |||||||| ||||| || || || Sbjct 18088389 GTCG--ATGGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTG 18088332 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 18088331 ACGAATATCTGCAT 18088318 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | | ||| | |||||| || ||| || || || |||||||| || Sbjct 18075905 ACCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAATCGGC 18075846 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||||||||||||||| ||| || | || | |||||||||||| || Sbjct 18075845 GAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGTGG 18075786 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||||| ||| | | || || || | |||| Sbjct 18075785 GATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTATCGATCGTGTCCGAGCTCTCCAC 18075726 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct 18075725 CTCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 18075678 >seq8 Length=74329289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 48487 AAGACAGTCAAAA-CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAA 48545 |||| | | |||| || ||||||| | | ||||| || || || ||| || |||| Sbjct 36267205 AAGAGACTTAAAAGCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAA 36267146 Query 48546 TGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCT 48605 |||| ||||| |||| | | | | || ||||| ||||| ||| | |||| | | || Sbjct 36267145 TGTTATAATCGGCCAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCT 36267086 Query 48606 GCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTAT 48665 |||| ||| || | | ||||| ||| || ||| ||| | | | ||||| | Sbjct 36267085 GCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGT 36267026 Query 48666 CGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCA 48725 | | | ||| ||| | || ||||| |||||||| ||||| || ||||||||||||| Sbjct 36267025 CTGAACTTTCCACCTCAAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCA 36266966 Query 48726 T 48726 | Sbjct 36266965 T 36266965 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || |||||| |||||||||||||| |||| | || | ||||| Sbjct 36266946 CACAAGATGTAGAGTTGACTCCTTCTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTC 36266887 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || |||| || | ||||||||| || | | ||| |||||| Sbjct 36266886 AAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 36266827 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || |||| | | |||||||| | ||| || | |||||||| || Sbjct 36266826 TATCTTAGCTTTGACATTATCAATGGTATCCGAGCTCTCAACTTCCAAAGTTATGGTCTT 36266767 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||||||||| Sbjct 36266766 CCCAGTAAGGGTCTTGACAAAAATCTGCAT 36266737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421225781570951