Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 >seq1 Length=40297282 Score = 149 bits (164), Expect = 7e-31 Identities = 427/642 (67%), Gaps = 25/642 (4%) Strand=Plus/Plus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||||| ||||||||| || | ||| | ||| ||||| || | |||| | | || Sbjct 21353399 ATAAACATGAGCATCCCCGATAACATGTACAAAATCACCGGGAGAAAGATCACAAACATG 21353458 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 |||||| | |||| | | ||||||||||| || || || || || || |||||||| Sbjct 21353459 AGCAATCATGCATGTAAGGAGAGCATAAGAAGCAACGTTGAATGGCACTCCCAATCCCAT 21353518 Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAGCATAAAATTGACA 7019 || || || | ||||| |||||| || || ||| | | |||| || || Sbjct 21353519 GTCAGCAGAGCGCTGATACATTTGACATGACAATTCCCTGTTTGCAACATAGAACTG-TG 21353577 Query 7020 CAATACATGACATGG--AGGTAAAACAGCCTGATCTAT-----ATCAGATGGATTCCAAG 7072 ||| ||||| ||| |||| || ||| ||| || |||||| |||||||||| Sbjct 21353578 CAA-ACATG---TGGCAAGGTGGAAGCGCC--ATCAATTTCAAATCAGAAGGATTCCAAG 21353631 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGT-TATAATTATTTGT 7131 ||| | || ||| || | || || |||| || || ||||| |||| |||| Sbjct 21353632 CAGAGAGTATAATTCGACGATAATCTGGA-TTATTCTTAATCTTGTAAATAACATCCAAC 21353690 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAA 7191 || ||||| | || || || ||| | || ||| ||| |||| |||| |||||| Sbjct 21353691 AACTGATCAAATCCTTGGCCAGTATAGTCAGCATGCATATTACTATACCTAGCACCAAAA 21353750 Query 7192 TGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT-GATTAAATCC 7250 || | ||| ||||| ||||||| || || || ||||||||||| |||| | | ||| Sbjct 21353751 TGCCGCCACTGAAAACCATAAACCGGTCCCAAGTCACCTTCTTCTCGATCTCTCAGATC- 21353809 Query 7251 TAATCGATTTAAATTAG-ATTTTGATCCATAAGCATCCCAAATATGTACAGAttttt-tt 7308 || | | || ||| | | ||| ||| ||||||| ||||| | ||||| | Sbjct 21353810 -AAGCCCGTAAAGGTAGTCTCTAGATGCATTGCCATCCCATATATGAATGCCTTTTTCCT 21353868 Query 7309 GATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCA 7368 || ||| | | ||||||||| || | | |||||| | ||||||||| || | |||| Sbjct 21353869 GAAGAATCT-TGGCATTTGTAGAACCACTTATGAACCACAGAAGTTCTTCAACAACTCCA 21353927 Query 7369 CGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA---TGTACTTAAATCATATCTATTC 7425 |||||||| | | | || || || || | |||||| | | | | || | | | || Sbjct 21353928 CGCCAAAATACTTTCTTAGTTGTCAAAAGAGGGAAGTTTTTGCGCAGATTAAACCGCATC 21353987 Query 7426 TGTAAACCAAATACTGAAAGAGTACCTGTTCCAGTTCTATCA 7467 || | ||||| ||| | ||||| |||||||| || ||| Sbjct 21353988 TGACACCCAAACTTTGATATGGTACCAGTTCCAGTCCTGTCA 21354029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595835122971600