Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq817 109 3e-19 seq7 109 3e-19 seq2 107 1e-18 seq9 105 3e-18 seq1 105 3e-18 seq11 104 1e-17 seq10 104 1e-17 seq5 104 1e-17 seq8 100 1e-16 >seq817 Length=16501 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| ||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2295 AATAGAAAGGGAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 2236 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 2235 GACGCTCTAACCAACTGAGCTAATAGGCC 2207 >seq7 Length=52445601 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| ||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 49924865 AATAGAAAGGGAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 49924806 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 49924805 GACGCTCTAACCAACTGAGCTAATAGGCC 49924777 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 44711851 AAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 44711792 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 44711791 CAGCTGAGCTAATAGGCC 44711774 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 8636619 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 8636678 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8636679 TGAGCTAATAGGCC 8636692 >seq2 Length=64235786 Score = 107 bits (118), Expect = 1e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || ||||| | | ||||||||| | | |||||||| ||||||||||||||||| Sbjct 32746937 AATAAAAGAAAAAGAATAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 32746878 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 32746877 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 32746845 Score = 105 bits (116), Expect = 3e-18 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || | ||||| | ||||||||| | | |||||||| |||||||||||||| Sbjct 6881079 TAGAACTACTCAAAAAAGGA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 6881022 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 6881021 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 6880986 >seq9 Length=39018107 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 33849018 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 33848959 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 33848958 CTGAGCTAATAGGCC 33848944 >seq1 Length=40297282 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 6245500 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 6245559 Query 11514 ACTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 6245560 GCTGAGCTAATAGGCCG 6245576 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 16448648 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 16448589 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 16448588 TGAGCTAATAGGCC 16448575 >seq11 Length=45509462 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 32162962 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 32162903 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 32162902 TGAGCTAATAGGCC 32162889 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | || ||||| |||||||||| |||||||||||| ||||| ||||| Sbjct 30547514 TTGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCATTATTAGCACGAGGCTCTAACCAA 30547573 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 30547574 CTGAGCTAATAGGCCG 30547589 >seq10 Length=39358841 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 33438093 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 33438152 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 33438153 TGAGCTAATAGGCC 33438166 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 36582987 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 36583046 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 36583047 TGAGCTAATAGGCC 36583060 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 30771667 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 30771726 Query 11515 CTGAGCTAATGGGCC--GTCGACGATT 11539 |||||||||| |||| |||| |||| Sbjct 30771727 CTGAGCTAATAGGCCAATTCGATGATT 30771753 >seq5 Length=74729908 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 67392087 AAAAAGAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 67392028 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 67392027 GCTCTAACCAGCTGAGCTAATAGGCC 67392002 Score = 86.0 bits (94), Expect = 3e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11459 CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 |||||| | | ||||| | ||||||||||||||| ||||||||||||| ||||||||| Sbjct 15932519 CCCATGCAGGTCCCGAACTTGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGA 15932460 Query 11519 GCTAATGGGCC 11529 |||||| |||| Sbjct 15932459 GCTAATAGGCC 15932449 >seq8 Length=74329289 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||||||||| |||||||||||| |||||| Sbjct 48527977 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTTGCACGACGCTCTAACCAAC 48527918 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 48527917 TGAGCTAATAGGCC 48527904 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475421539276