Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-29 seq11 120 5e-23 seq10 109 9e-20 seq5 105 1e-18 seq4 100 4e-17 >seq1 Length=40297282 Score = 141 bits (156), Expect = 1e-29 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || || |||||||| || ||||||||||| || || Sbjct 8006812 GCGAAGCGCCATCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8006754 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || || |||||| || || || |||| || |||| Sbjct 8006753 CCGCCGTCTCGCCCGCCGTGGCGGCGTGAAGCGTATCAGCGGCCTGATCTACGAGGAGAC 8006694 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 8006693 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 8006634 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| |||||| ||||||| ||||||| || Sbjct 8006633 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGC 8006589 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 19923595 CTCCGCGACAACATCCAGGGAATCACCAAGCCGGCCATCCGCCGCCTGGCCCGCCGCGGC 19923536 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || | |||| || |||| || | || | |||||||| Sbjct 19923535 GGCGTCAAGCGCATAAGCGGCCTCATCTACGAGGAGACGCGAGGCGTCCTCAAGATCTTG 19923476 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || || ||||||||||| || ||||| ||| Sbjct 19923475 CTCGAGAACGTCATCCGCGACGCCGTCGCGTACACCGAGCACGCCCGTCGCAAGACCGTC 19923416 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| ||||||| || Sbjct 19923415 ACCGCCATGGACGTCGTCTACGC 19923393 >seq11 Length=45509462 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 40139704 GCGAAGCGGCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACGAAGCCGGCCAT 40139762 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| || || | |||| || |||| Sbjct 40139763 CCGCCGCCTGGCCCGCCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 40139822 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 40139823 CCGCGGGGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 40139882 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || | || || Sbjct 40139883 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGGG 40139942 Query 16672 CCG 16674 ||| Sbjct 40139943 CCG 40139945 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 38045765 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGCCTGGCCCGCCGGGGC 38045706 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || || |||| || |||| || | || | ||||||||| Sbjct 38045705 GGCGTGAAGCGCATCAGCGGGCTGATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 38045646 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| ||||||||||| || ||||| ||| Sbjct 38045645 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTC 38045586 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 38045585 ACCGCCATGGACGTCGTGTACGC 38045563 >seq10 Length=39358841 Score = 109 bits (120), Expect = 9e-20 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 26610596 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCCCGCCGTGGC 26610655 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || || |||| || |||| || | || ||||||||||| Sbjct 26610656 GGGGTGAAGCGTATCAGCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTGAAGATCTTC 26610715 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| || |||||||| || ||||| || Sbjct 26610716 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACGGAGCACGCGCGCCGGAAGACGGTG 26610775 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 26610776 ACCGCCATGGACGTCGTGTACGC 26610798 Score = 107 bits (118), Expect = 3e-19 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || || |||||||| || ||||| ||||| || || Sbjct 12599922 GCGAAGCGGCACCGGAAGGTC-CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 12599980 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| || || || |||| || |||| Sbjct 12599981 CCGCCGCCTGGCGCGGCGGGGCGGCGTGAAGCGCATCAGCGGGCTGATCTACGAGGAGAC 12600040 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| ||| ||||| || ||| ||||| Sbjct 12600041 CCGGGGCGTCCTCAAGATCTTCCTCGAGAACGTGATCAGGGATGCCGTCACCTACACCGA 12600100 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| | ||||| || | || | || || Sbjct 12600101 GCACGCCCGCCGCAAGACGGTGACGGCCATGGACGTTGTCTACGCGCTCAAGAGGCAGGG 12600160 Query 16672 CCG 16674 ||| Sbjct 12600161 CCG 12600163 >seq5 Length=74729908 Score = 105 bits (116), Expect = 1e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 11492761 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGGCTGGCTCGCCGGGGC 11492820 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || | ||||||||| Sbjct 11492821 GGGGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 11492880 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| ||||||||||| || ||||| || Sbjct 11492881 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGAGCACGCCCGGCGGAAGACCGTG 11492940 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || | || || || ||||| Sbjct 11492941 ACGGCCATGGACGTGGTGTACGCGCTCAAGCGGCAGGGCCG 11492981 >seq4 Length=41978195 Score = 100 bits (110), Expect = 4e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | || || ||||| || Sbjct 30489169 CTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGAGGCTCGCCCGTCGGGGC 30489110 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || |||| || |||| || | || | ||||||||| Sbjct 30489109 GGCGTGAAGCGCATAAGCGGGCTGATCTACGAGGAGACCCGGGGGGTCCTCAAGATCTTC 30489050 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| || ||||| || Sbjct 30489049 CTCGAGAACGTGATCCGCGACGCCGTGACCTACACCGAGCACGCCCGGCGGAAGACGGTG 30488990 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 30488989 ACCGCCATGGACGTCGTGTACGC 30488967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070673266043