Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq2340 125 2e-24 >seq2340 Length=6312 Score = 125 bits (138), Expect = 2e-24 Identities = 314/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 35241 GCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAATTCCGGGCCGTTGTAGCCTTCC 35300 ||||| |||||||||||||| ||||||||| | | || | ||||||||| || Sbjct 4449 GCGCGCTCGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTGTACAGCTCG 4508 Query 35301 GCGAACGCTGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCGCGACG 35360 |||| | ||||| ||| |||| || || |||| | | |||||| ||| | Sbjct 4509 GCGACCTTGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCGGCCTCGATG 4568 Query 35361 TACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCAGCTCCATACGGGACACGAATTCG 35420 | || || || || || || ||||||| ||||| || |||| || ||||| || Sbjct 4569 AAGCGGACAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCGACGAAGTCC 4628 Query 35421 TCGACGCTCGC-GTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCGCCCCA 35479 | ||| ||| ||| || || || | |||||| ||| ||||||||||||| |||||||| Sbjct 4629 TGCACG-TCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAGGCGCCCCA 4687 Query 35480 GCTCGCGGACTCGTAAGCGGATGCCGCGTCGA--TG-CGCGCCGCAGTGTCGAGCCGCAC 35536 ||| || ||||| |||| | | |||| || || ||| | |||| ||| Sbjct 4688 GCTGGCCGACTCCAGGGCGGCGGTGTCATCGAGCTGACGGGCC---TGGGCGAGACGCTG 4744 Query 35537 GTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGACGCCCGGCCATCG 35596 | ||||||| |||||| |||||||||| ||| || ||||| | | | || Sbjct 4745 ATGCTCGGCGGTGCCGCCGATGTAGCCGCCGGCCTTTGGATTGACCAGGGCAGG----GT 4800 Query 35597 TGCGGCGGCAGCGTCCGCCGCTTCCCTGCCGACATTCGCGACGAGCCGCTGATACATGAC 35656 || ||||| || ||| | || ||| || ||| | |||||||| Sbjct 4801 TGAGGCGG--------GCAAGTTCGTCGGCGCGGGGCGCCTGCAGGCGCCGGTACATGAC 4852 Query 35657 GTGCCGCTCGAACAGAATCTTCGGCCGGCCGTCGTCCAGAAAGCCGACGCC 35707 || ||||||||||| ||| |||| ||||| |||||||| ||| |||| Sbjct 4853 ATGACGCTCGAACAGGATCACCGGCTTGCCGTTATCCAGAAACCCG-CGCC 4902 Score = 102 bits (112), Expect = 2e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 36722 AGCACCACGCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTCAACCGTGCCC 36781 ||||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||| ||| Sbjct 5627 AGCACGGCGCCGTGGTCGGCCAGGCCAGGGTTGGCATCGAGCACCGCTTCGACCACGCCG 5686 Query 36782 GCCGTGCTGCCGTAGTGCCTCCAGCACAGCGCGTCGAGCGTCTCGCCTTGC 36832 ||||||| ||||||||||| ||||||||| || |||| || ||| |||| Sbjct 5687 GCCGTGCGGCCGTAGTGCCGCCAGCACAGGGCATCGACGGTGTCGTGTTGC 5737 Score = 84.2 bits (92), Expect = 5e-12 Identities = 216/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 30638 CTCCGGATCGGCCGCCGTGACCACGAGCCGCTCGACATCGAACAGCGCCGCGATGTGTTC 30697 || ||| | ||||||| | || || |||| ||| | ||| |||||| || || Sbjct 1344 CTGCGGCTGGGCCGCCTGAATGACCAGGCGCTTGACGTTGAAGTTGCCCGCGACCTGGTC 1403 Query 30698 GAGCGTCGT-GCCGCGCGCGTAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTGATGAGCT 30756 || ||||| | ||| || || ||||| || || ||| | ||||||| ||| Sbjct 1404 CAG-GTCGTTGTCGCCGGCCGAGCTGAGCATCACCGCGAGCGACGCTTCGTTGACCCGCT 1462 Query 30757 GCCTCAGTAGGACTTCGCGATAGGCGTTCTCCTGAAGGACGCGCGTCACGGGCTCGGATT 30816 | | ||| | | ||| || |||||||||||||| || | || | |||||| || | Sbjct 1463 GACGCAGGATCATTTCCCGGTAGGCGTTCTCCTGCAGCAACTTGGTGATGGGCTCCGACT 1522 Query 30817 CGAGCGCGAG-CGTCGCGGCGATTTCCGCCTGGTGCTCGGGCGGATACAGCGACACGAGG 30875 | ||| | || ||| |||||||| || ||||| | || | || | || ||| Sbjct 1523 CCAGCTCAAGGCGT-GCGGCGATCTCGGCCTGCTCATCCGCAGGCCATAGGCTGACGGCA 1581 Query 30876 CGCGCCTTGCGCTCGGCGAACAGCGTCTCGAAGTCGAGCGGGTCGACGATGTCCGGCGCG 30935 |||||||||||||||| | | |||||||||| | | ||||| | | ||||||| Sbjct 1582 TAAGCCTTGCGCTCGGCGAGGATCTGTTCGAAGTCGATCTGCTCGACCACCTGCGGCGCG 1641 Query 30936 GGGAGCTGCGAAAGATCGATGGGC 30959 || ||||| || ||||| ||| Sbjct 1642 GGCAGCTGACTGAGGTCGATAGGC 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120316125823062