Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq1 89.7 5e-13 >seq6 Length=53892272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || | ||||| ||| | ||||| | ||| | || Sbjct 13058878 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 13058819 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | |||||| || ||| ||||| ||||| || || || ||||| Sbjct 13058818 TGACACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 13058759 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||||| | || || || || ||||||| || | | || ||||| Sbjct 13058758 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATGGCAGGACTCTGGCAGATTATAA 13058699 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||||||| ||| | || |||| ||| | ||||| ||||| Sbjct 13058698 CATCCAGAAAGAATCGACTCTTCACTTGGTTCTGCGTCTTAGGGGAGG 13058651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| |||| | ||| Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||| | || ||| ||| || ||||| |||||||| ||||| || || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| ||| | | ||| |||||| Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || |||| |||| || | || || ||||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 43309273 >seq1 Length=40297282 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || ||||||| |||| | || | Sbjct 18075450 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTGGAGAGCTCC 18075509 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || |||||||| || Sbjct 18075510 GACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCCGACCAG 18075569 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| || ||||| || | | | | || ||| || ||| Sbjct 18075570 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAAC 18075629 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || ||||||| |||||||| ||| | || || Sbjct 18075630 ATTCAGAAGGAGTCGACGCTCCATCTCGTCCTGAGGCTTCGCGGGGG 18075676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 18088377 CGACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGACCA 18088436 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || ||| || || |||||||| | | | | || ||| || || Sbjct 18088437 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACCCTCGCCGATTACAA 18088496 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||| || || || || ||||||| |||||||| || Sbjct 18088497 CATTCAGAAGGAGTCGACGCTCCATCTCGTCCTGAGGCT 18088535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478632776780720