Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 192 2e-43 seq5 93.3 1e-13 >seq1 Length=40297282 Score = 192 bits (212), Expect = 2e-43 Identities = 433/637 (68%), Gaps = 14/637 (2%) Strand=Plus/Minus Query 111248 TGACAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACA-ATGCGTTTTAATCTGT 111306 |||||| || || ||||||||| || ||||| | || ||||| ||||||||| Sbjct 21354029 TGACAGGACTGGAACTGGTACCATATCAAAGTTTGG-GTGTCAGATGCGGTTTAATCTGC 21353971 Query 111307 CAACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAAC 111366 | | || || ||| | ||||| ||| | || |||| ||| |||| ||||||| Sbjct 21353970 GCAAAAACTTCCCTCTTTTGACAACTAAGAAAGTATTTTGGCGTGGAGTTGTTGAAGAAC 21353911 Query 111367 TTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATG-TAAAA 111425 |||||||||| || | || ||||||||| || ||| ||| ||||| | | Sbjct 21353910 TTCTGTGGTTCATAAGTGGTTCTACAAATGCCAAGATTCTT-CAGGAAAAAGGCATTCAT 21353852 Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA 111485 || |||||||| |||| ||| | |||| || | ||| ||| || ||| Sbjct 21353851 ATATGGGATGGCAATGCATCTAGAGACTACCTTTACGGGCTTGATCTGAGAGATCGAGAA 21353792 Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 |||||||| | ||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 21353791 GAAGGTGACTTGGGACCGGTTTATGGTTTTCAGTGGCGGCATTTTGGTGCTAGGTATAGT 21353732 Query 111546 ACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 | ||||| | || | ||| | || ||| |||||| || | |||| ||| | | Sbjct 21353731 AATATGCATG-CTGACTATACTGGCCAAGGATTTGATCAGTTGTTGGATGTTATTTACAA 21353673 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 |||||||| || ||| || |||||| ||||| | ||| ||||| || || || Sbjct 21353672 GATTAAGAATAATCCAGATTATCGTCGAATTATACTCTCTGCTTGGAATCCTTCTGATTT 21353613 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGT---ACACGACG 111720 | || ||||| |||||||| || || | | | ||| ||||| ||||| | || | | Sbjct 21353612 GAAATTGATGGCGCTTCCACCTTGCCA-CATGTTTGCACAGTTCTATGTTGCAAAC-AGG 21353555 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 | || | ||||| |||||||||||||| |||||||| || || | || || || || | Sbjct 21353554 GAAT--TGTCATGTCAAATGTATCAGCGCTCTGCTGACATGGGATTGGGAGTGCCATTCA 21353497 Query 111781 ATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGG 111840 | |||| ||| || || ||||| ||| | || |||||| || |||| || | Sbjct 21353496 ACGTTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCATGTTTGTGATCTTTCTCCCG 21353437 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || | || |||||||| ||||| |||||||| Sbjct 21353436 GTGATTTTGTACATGTTATCGGGGATGCTCATGTTTA 21353400 >seq5 Length=74729908 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| ||| |||| | |||||||| |||| ||||||||||||||| || Sbjct 56197100 GCTCCATGAGCAATCATGCAATCTCTTTCCATCTCTCCAAATCGGAGACCACCATCTCGA 56197041 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGT 371219 || ||||| || | ||| | |||||| | || | ||| || || | ||| Sbjct 56197040 GATCGTCCCTCGGCAGGCTGCCTTGTAAGAATTTGCACAGGACCCCGACCACGGGAATGG 56196981 Query 371220 GACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATA 371279 ||| ||| | |||||||||||||| | ||||||||| ||| | | ||||||||| Sbjct 56196980 ATCTTATCATCCACCATGTGCTTGAGTCTCTGATAATATGTTGGACCCAGGAAAATCATA 56196921 Query 371280 G 371280 | Sbjct 56196920 G 56196920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303270922171682