Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq1 104 2e-17 seq8 86.0 5e-12 seq76 84.2 2e-11 >seq6 Length=53892272 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | ||||| ||| | || || | ||||| ||| | Sbjct 13058878 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 13058819 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| || ||| ||||| |||||||| || || ||||| Sbjct 13058818 TGACACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 13058759 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || |||| | || ||||| || ||||||| ||| | | |||||||| Sbjct 13058758 GCAGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATGGCAGGACTCTGGCAGATTATAA 13058699 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || |||||||| || |||| || || Sbjct 13058698 CATCCAGAAAGAATCGACTCTTCACTTGGT 13058669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| || | || ||| |||| || || | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||| | || ||| ||| || ||||| ||||| || ||||| || || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | |||||||| || ||||||| | ||| | | |||||||||| Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 43309256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | |||||||| | || || | ||||| ||| | Sbjct 13065598 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 13065539 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||||||| | |||||| || ||| ||||| |||||||| || || ||||| Sbjct 13065538 TGATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 13065479 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || |||| | || || || || || |||| || | | |||||||| Sbjct 13065478 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATAA 13065419 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| || || |||| || || | | |||| ||||| Sbjct 13065418 CATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 13065371 >seq1 Length=40297282 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || |||| || |||| || ||| | | Sbjct 18075450 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTGGAGAGCTCC 18075509 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| |||||||| || Sbjct 18075510 GACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCCGACCAG 18075569 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| ||||| || | | | | | || |||||| ||| Sbjct 18075570 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAAC 18075629 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 18075630 ATTCAGAAGGAGTCGAC 18075646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || || |||| || ||| | | Sbjct 18088318 ATGCAGATATTCGTCAAGACCCTGACCGGCAAAACCATCACGCTCGAGGTGGAGAGCTCC 18088377 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 18088378 GACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGACCAG 18088437 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| |||||||| | | | | | || |||||| ||| Sbjct 18088438 CAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACCCTCGCCGATTACAAC 18088497 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 18088498 ATTCAGAAGGAGTCGAC 18088514 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 18079128 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 18079069 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| |||||||| || Sbjct 18079068 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 18079009 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| || || |||| | | | | || |||||| || Sbjct 18079008 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGATTACAAT 18078949 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 18078948 ATCCAGAAGGAGTCTAC 18078932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| |||| |||||| Sbjct 18056586 CAAGATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAG 18056527 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| |||||||| Sbjct 18056526 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGA 18056467 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| | | | | | | || ||| || Sbjct 18056466 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGACAACGGCCGCACCCTCGCCGACTA 18056407 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 18056406 CAACATCCAGAAGGAGTCCAC 18056386 >seq8 Length=74329289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | ||||| ||| | Sbjct 36266737 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATAACTTTGGAAGTTGAGAGCTCG 36266796 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | |||||| ||||| |||||||||||||| || || ||||| Sbjct 36266797 GATACCATTGATAATGTCAAAGCTAAGATACAGGACAAAGAAGGCATTCCCCCAGATCAG 36266856 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || ||| |||||||| || |||| | | | | ||||| ||| Sbjct 36266857 CAGAGGTTGATTTTCGCCGGGAAGCAACTTGAGGATGGCCGGACACTGGCGGATTACAAC 36266916 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | ||| | ||| Sbjct 36266917 ATTCAGAAGGAGTCAACTCTACATCTTGTG 36266946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 11069838 CAAGATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGTC 11069897 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 11069898 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 11069957 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| || | | | | | || ||| || Sbjct 11069958 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 11070017 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 11070018 CAACATCCAGAAGGAGTCCAC 11070038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 11074838 CAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGTC 11074897 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 11074898 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 11074957 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| || | | | | | || ||| || Sbjct 11074958 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 11075017 Query 24167 TAACATTCAAAAAGAATCTAC 24187 |||||| || || || || || Sbjct 11075018 TAACATCCAGAAGGAGTCCAC 11075038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || || || ||||| ||||| || || Sbjct 36267025 GACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCAG 36267084 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | ||| |||||||| ||||||| || | | |||||||||| Sbjct 36267085 CAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAAC 36267144 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||| || || | || ||||| Sbjct 36267145 ATTCAGAAAGAGTCGACTCTGCACTTAGT 36267173 >seq76 Length=148772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 146670 CAAGATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGTC 146729 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 146730 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 146789 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| || | | | | | || ||| || Sbjct 146790 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 146849 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 146850 CAACATCCAGAAGGAGTCCAC 146870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429910057527405