Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq8 109 5e-19 seq6 104 2e-17 >seq8 Length=74329289 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || || || || || || | ||| ||| | Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| ||| |||| || ||| |||||| || || |||||| | ||| |||| Sbjct 36266568 CGACACCATTG-ACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 36266626 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| ||||| | ||| || |||||| | || |||| | || |||| ||||| | Sbjct 36266627 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 36266686 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || || ||||| ||| | || ||||| || || || | ||||| Sbjct 36266687 ACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGG 36266735 >seq6 Length=53892272 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || ||||| || || || | ||| |||| | Sbjct 13065598 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 13065539 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || | | |||| || ||| |||||| || || |||||| | ||| |||| Sbjct 13065538 TGATACCATCG-ACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 13065480 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||||| ||| || ||||| |||| |||| | || |||| ||||||| Sbjct 13065479 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 13065420 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| || |||||||| ||| | || |||| || | || | ||||| Sbjct 13065419 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 13065371 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || || || || ||| |||| ||| | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| || | | || ||| |||||| || || ||||| |||| || ||| Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| ||||| || | ||||||| | |||| |||||||||||||| Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || ||||| || | || ||||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 43309256 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || || || || ||||| || || | ||| ||| | Sbjct 13058878 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 13058819 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | |||| || ||| |||||| || || |||||| | ||| |||| Sbjct 13058818 TGACACCATCG-ACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 13058760 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || |||| ||| || || || ||||||||| || || |||| ||||||| Sbjct 13058759 AGCAGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATGGCAGGACTCTGGCAGATTATA 13058700 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 |||| || ||||| || ||| | || |||| Sbjct 13058699 ACATCCAGAAAGAATCGACTCTTCACTTGGT 13058669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425318334610120