Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq1 125 6e-24 seq8 118 9e-22 >seq6 Length=53892272 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || |||| || ||| ||| Sbjct 13059105 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACTCTCGAGGTCGAGAGTTCT 13059046 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| ||||||||||||||||| || ||||| Sbjct 13059045 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 13058986 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| ||||| ||| | || |||| || || | | || ||||| Sbjct 13058985 CAGCGGTTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGGACGCTTGCAGACTACAAC 13058926 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| |||||||| || || || || || | || |||||||||| Sbjct 13058925 ATACAAAAGGAATCCACCCTTCACTTGGTTCTCCGTCTGAGAGGAGGAA 13058877 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || |||||| ||| Sbjct 13065825 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACTCTTGAGGTGGAGAGTTCT 13065766 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| ||||||||||||||||| || ||||| Sbjct 13065765 GATACCATTGACAATGTGAAGGCCAAAATTCAG-GACAAAGAAGGGATTCCCCCAGACCA 13065707 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| ||| | || |||| || || | | || ||||| Sbjct 13065706 GCAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGCCGGACGCTTGCAGACTACAA 13065647 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || |||||||| || || || || ||| | | |||||||||| Sbjct 13065646 CATCCAGAAGGAATCCACCCTTCACTTGGTCCTACGTTTGAGAGGAGGAA 13065597 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || | ||||| | || |||||| ||| Sbjct 13058649 ATGCAGATTTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGAGCTCT 13058590 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| ||||||| | || ||||| || || || || || || Sbjct 13058589 GACACGATCGATAATGTCA---AAGCAAAGATACAG-GACAAGGAGGGAATCCCCCCAGA 13058534 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||||| | |||||||| || || ||| | || |||| | || ||| ||||| Sbjct 13058533 CCAACAGCGGTTGATTTTTGCAGGGAAGCAACTTGAGGATGGCAGGACACTGGCTGATTA 13058474 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| || || || || ||| | || || Sbjct 13058473 CAATATTCAAAAGGAGTCAACTCTCCATCTCGTCCT 13058438 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || || |||| || |||| || || || Sbjct 13066281 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 13066222 Query 25059 GACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || || || || || ||| Sbjct 13066221 GACACAATTGA--CAATGTAAAGGCCAAGATTCAA-GACAAGGAGGGAATCCCCCCGGAC 13066165 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| || | || |||| ||||| ||| ||||| Sbjct 13066164 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGGCTGATTAT 13066105 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || ||||| || ||||| ||||| | || ||||| || Sbjct 13066104 AACATTCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGAGAGGTGG 13066055 >seq1 Length=40297282 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || ||||||| |||| |||||| || Sbjct 18075678 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCG 18075737 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || ||||| |||||| ||||| || || || ||||| || || Sbjct 18075738 GACACGATCGA-TAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCACCGGATCA 18075796 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | || || | |||||| | | ||||||||| Sbjct 18075797 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGTCGCACGCTCGCCGATTACAA 18075856 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || || || ||| | ||||| Sbjct 18075857 TATCCAGAAAGAGTCGACCCTTCATCTCGTGCT 18075889 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| | || |||||| || Sbjct 18075906 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 18075965 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| ||||| || ||||||||||| || || Sbjct 18075966 GACACGATCGACAACGTGAAGGCGAAAATTCAG-GACAAGGAGGGGATTCCACCGGATCA 18076024 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | || || | |||||| | | ||||||||| Sbjct 18076025 GCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGTCGCACCCTCGCCGATTACAA 18076084 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 18076085 TATCCAGAAGGAGTCGACCCTGCA 18076108 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| | || |||||| || Sbjct 18088546 ATGCACATCTTCGTCAAGACCCTGACTGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 18088605 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| ||||| || ||||| || || || || Sbjct 18088606 GACACGATCGACAACGTGAAGGCGAAGATTCAG-GACAAGGAGGGGATCCCGCCGGATCA 18088664 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | || || | |||||| | | ||||||||| Sbjct 18088665 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGTCGCACGCTCGCCGATTACAA 18088724 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || || || ||| | ||||| || | || ||||| Sbjct 18088725 TATCCAGAAGGAGTCGACCCTCCATCTCGTGCTGCGGTTGAGGGGAGG 18088772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 18079128 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 18079069 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 18079068 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 18079009 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| | | |||||||||| Sbjct 18079008 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGATTACAAT 18078949 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 18078948 ATCCAGAAGGAGTCTACCCTGCA 18078926 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| | || |||||| || Sbjct 18088774 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 18088833 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||| | ||| || || || || || || || || || Sbjct 18088834 GACACGATCGACAACGTGAAGGCAAAGATTCAG-GATAAGGAGGGCATCCCGCCGGATCA 18088892 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | || || || ||||| | | ||||||||| Sbjct 18088893 GCAGCGACTCATCTTCGCCGGGAAGCAGCTGGAGGACGAACGCACCCTCGCCGATTACAA 18088952 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 18088953 TATCCAGAAGGAGTCTACCCTGCA 18088976 >seq8 Length=74329289 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| |||||||||| ||||||| | || ||||| || Sbjct 36266964 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTTGAGGTGGAAAGTTC 36267023 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| || || || || || || || ||||| Sbjct 36267024 AGACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 36267083 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||||||||| || ||| | ||||||| | || ||| |||||| || Sbjct 36267084 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 36267143 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || ||||| || Sbjct 36267144 CATTCAGAAAGAGTCGACTCTGCACTTAGTCCT 36267176 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || |||| || | || || || || Sbjct 36266281 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATAACCCTTGAGGTTGAAAGTTCG 36266340 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || ||||| |||||| ||||| || || || || || ||||| Sbjct 36266341 GACACTATCGA-TAACGTGAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCA 36266399 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || ||||| ||| | || |||| | || | | || ||||| Sbjct 36266400 GCAGAGGTTGATTTTCGCTGGCAAGCAACTTGAGGATGGCAGGACGCTTGCAGACTACAA 36266459 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| |||||||| || || || ||||| | || || ||||||| Sbjct 36266460 CATTCAAAAGGAATCCACCCTTCACTTGGTGCTCCGTCTGAGGGGAGGAA 36266509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | ||||| ||| || Sbjct 36266737 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATAACTTTGGAAGTTGAGAGCTCG 36266796 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| || | || ||||||||||| ||||| || || Sbjct 36266797 GATACCATTGATAATGTCA---AAGCTAAGATACAG-GACAAAGAAGGCATTCCCCCAGA 36266852 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | ||||| ||||| || ||| | || |||| || || ||| ||||| Sbjct 36266853 TCAGCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAGGATGGCCGGACACTGGCGGATTA 36266912 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || |||||| | ||||| Sbjct 36266913 CAACATTCAGAAGGAGTCAACTCTACATCTTGTGCT 36266948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301852853065