Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 167 5e-36 seq8 134 3e-26 seq417 93.3 9e-14 seq4 93.3 9e-14 seq7 89.7 1e-12 seq2532 87.8 4e-12 seq10 87.8 4e-12 seq6 87.8 4e-12 seq3 87.8 4e-12 seq2 87.8 4e-12 >seq9 Length=39018107 Score = 167 bits (184), Expect = 5e-36 Identities = 551/849 (65%), Gaps = 17/849 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| ||||| |||||||| ||||||| ||||| || Sbjct 26347619 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTTCGTC 26347678 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | |||| |||| ||| || || ||| | ||||| || || ||||| | Sbjct 26347679 ACGTCGTACACCTTGCCGCAGCCGAGCGCGCCGAGAAGCCGGTCGGCGACGAACTCGATG 26347738 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||||| || |||||| |||| || || || | || || |||| | Sbjct 26347739 TACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCGCACGGCAGCGCGTCGCAGACG 26347798 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| ||| || | || |||||| ||| || |||||||| | || | || Sbjct 26347799 AACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCTTCACCCGCTCCTCGCTCGGC 26347858 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 |||||| |||| ||||| ||||| | | || | ||| || |||||||||||| Sbjct 26347859 TTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGA 26347918 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| |||||| || | || || ||||| | || || ||| ||||||||||| Sbjct 26347919 GAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAG 26347978 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||| || ||||| | | ||||| || || | | || | |||||| Sbjct 26347979 ATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAGGCGAGGAGGCGC 26348038 Query 251983 TCAGCAAACGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAAC 252041 || || || ||| | || || | | | | ||||| | ||||| | || Sbjct 26348039 TCCGCGAAGGAC-TCCCCGCCGTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCGAC 26348097 Query 252042 CGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAG 252101 || |||| || |||| || ||||| || | |||||| ||||| || | Sbjct 26348098 GGCCGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTA 26348157 Query 252102 CGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGC 252161 | || || ||||| ||||||||| || |||||| ||| || |||||| | | Sbjct 26348158 GGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCC 26348217 Query 252162 ATAGAATAGACGCGCG----GAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGT 252217 |||| || |||| | || | | ||| ||| | ||| | || | || Sbjct 26348218 GTAGA--AGGCGCGGGCCTCCGAGAGCTG--GACCTCCTTCATGAAGCGGACGGCGAGGT 26348273 Query 252218 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGAC 252277 |||| | || ||||| ||| | | || |||||| | || | | ||| |||||| | Sbjct 26348274 TCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAGTGGC 26348333 Query 252278 GCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTTC 252335 |||| ||||| |||| | | ||||| | | |||||| ||||| || || Sbjct 26348334 GCTCGCCGTCGGTGAG---GCCCTCCCAGTGGCGGAGGTCCTG--GGAGAGGTCGACCTC 26348388 Query 252336 TTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACTT 252395 || | |||||||| | || | |||||| ||||||||| | | | | ||||||| Sbjct 26348389 CTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTACATCTCCCAGATCTGCGGGTACTG 26348448 Query 252396 GATTGGGAA 252404 ||| ||||| Sbjct 26348449 GATAGGGAA 26348457 >seq8 Length=74329289 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||||||||||||| || | || || || || | || Sbjct 39029788 TCAATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTATTCTGCTCA 39029729 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || || |||| | | ||||| ||||| || |||||||||||||||||||| ||| Sbjct 39029728 TTTAAAAGGAATTTCATCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCTGAA 39029669 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||||| |||||||| ||||| || |||| | || ||||||||| Sbjct 39029668 CATTCAGCATACCATCATGGTGAGCAAAGTCTTGCTAGTACCATCATTGGAATGGCACAG 39029609 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 || ||||| ||||| |||||||| ||| | || | || || || || ||||| |||| Sbjct 39029608 GATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCAAATGGCCAATTTGGGACTCG 39029550 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||||||||||||| || | || || || || | || Sbjct 36952927 TCAATTCCTTCCATGGTCGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTTTTCTGCTCA 36952986 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 ||||| |||| | | ||||| ||||| || |||||||||||||||||||| || Sbjct 36952987 TTCAAAAGGAATTTCATCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCTGAG 36953046 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||||| |||||||| ||||| || |||| | || ||||||||| Sbjct 36953047 CATTCAGCATACCATCATGGTGAGCAAAGTCTTGCTAGTACCATAATCGGAATGGCACAG 36953106 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || | ||| ||||| ||||| || ||| | || | || || || || ||||| Sbjct 36953107 GATTTTGTAGGCAGCAACAATATTAACCTTCTCATGCCGAATGGCCAATTTGG 36953159 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 42036189 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42036130 Query 142563 CCCCAC 142568 |||||| Sbjct 42036129 CCCCAC 42036124 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 42036340 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42036281 Query 142563 CCCCAC 142568 |||||| Sbjct 42036280 CCCCAC 42036275 >seq417 Length=28436 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 19868 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19809 Query 142563 CCCCAC 142568 |||||| Sbjct 19808 CCCCAC 19803 >seq4 Length=41978195 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 33907131 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33907190 Query 142563 CCCCAC 142568 |||||| Sbjct 33907191 CCCCAC 33907196 >seq7 Length=52445601 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 35397498 GAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 35397439 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 35397438 GAGCCCCAC 35397430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 47972398 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47972457 Query 142563 CCCCAC 142568 |||||| Sbjct 47972458 CCCCAC 47972463 >seq2532 Length=5633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2951 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3010 Query 142563 CCCCAC 142568 |||||| Sbjct 3011 CCCCAC 3016 >seq10 Length=39358841 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 209761 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 209702 Query 142563 CCCCAC 142568 |||||| Sbjct 209701 CCCCAC 209696 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1881503 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1881562 Query 142563 CCCCAC 142568 |||||| Sbjct 1881563 CCCCAC 1881568 >seq6 Length=53892272 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4326956 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4327015 Query 142563 CCCCAC 142568 |||||| Sbjct 4327016 CCCCAC 4327021 >seq3 Length=80079441 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 13754594 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13754535 Query 142563 CCCCAC 142568 |||||| Sbjct 13754534 CCCCAC 13754529 >seq2 Length=64235786 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 46942224 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 46942165 Query 142563 CCCCAC 142568 |||||| Sbjct 46942164 CCCCAC 46942159 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 62367997 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 62367938 Query 142563 CCCCAC 142568 |||||| Sbjct 62367937 CCCCAC 62367932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027771599493791