Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 167 5e-36
seq8 134 3e-26
seq417 93.3 9e-14
seq4 93.3 9e-14
seq7 89.7 1e-12
seq2532 87.8 4e-12
seq10 87.8 4e-12
seq6 87.8 4e-12
seq3 87.8 4e-12
seq2 87.8 4e-12
>seq9
Length=39018107
Score = 167 bits (184), Expect = 5e-36
Identities = 551/849 (65%), Gaps = 17/849 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||| |||| ||| ||||| |||||||| ||||||| ||||| ||
Sbjct 26347619 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTTCGTC 26347678
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| | |||| |||| ||| || || ||| | ||||| || || ||||| |
Sbjct 26347679 ACGTCGTACACCTTGCCGCAGCCGAGCGCGCCGAGAAGCCGGTCGGCGACGAACTCGATG 26347738
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||||| || |||||| |||| || || || | || || |||| |
Sbjct 26347739 TACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCGCACGGCAGCGCGTCGCAGACG 26347798
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802
|| ||| ||| || | || |||||| ||| || |||||||| | || | ||
Sbjct 26347799 AACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCTTCACCCGCTCCTCGCTCGGC 26347858
Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862
|||||| |||| ||||| ||||| | | || | ||| || ||||||||||||
Sbjct 26347859 TTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGA 26347918
Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922
||||| |||||| || | || || ||||| | || || ||| |||||||||||
Sbjct 26347919 GAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAG 26347978
Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982
|| ||||| ||| || ||||| | | ||||| || || | | || | ||||||
Sbjct 26347979 ATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAGGCGAGGAGGCGC 26348038
Query 251983 TCAGCAAACGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAAC 252041
|| || || ||| | || || | | | | ||||| | ||||| | ||
Sbjct 26348039 TCCGCGAAGGAC-TCCCCGCCGTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCGAC 26348097
Query 252042 CGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAG 252101
|| |||| || |||| || ||||| || | |||||| ||||| || |
Sbjct 26348098 GGCCGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTA 26348157
Query 252102 CGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGC 252161
| || || ||||| ||||||||| || |||||| ||| || |||||| | |
Sbjct 26348158 GGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCC 26348217
Query 252162 ATAGAATAGACGCGCG----GAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGT 252217
|||| || |||| | || | | ||| ||| | ||| | || | ||
Sbjct 26348218 GTAGA--AGGCGCGGGCCTCCGAGAGCTG--GACCTCCTTCATGAAGCGGACGGCGAGGT 26348273
Query 252218 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGAC 252277
|||| | || ||||| ||| | | || |||||| | || | | ||| |||||| |
Sbjct 26348274 TCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAGTGGC 26348333
Query 252278 GCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTTC 252335
|||| ||||| |||| | | ||||| | | |||||| ||||| || ||
Sbjct 26348334 GCTCGCCGTCGGTGAG---GCCCTCCCAGTGGCGGAGGTCCTG--GGAGAGGTCGACCTC 26348388
Query 252336 TTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACTT 252395
|| | |||||||| | || | |||||| ||||||||| | | | | |||||||
Sbjct 26348389 CTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTACATCTCCCAGATCTGCGGGTACTG 26348448
Query 252396 GATTGGGAA 252404
||| |||||
Sbjct 26348449 GATAGGGAA 26348457
>seq8
Length=74329289
Score = 134 bits (148), Expect = 3e-26
Identities = 173/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628
|| ||||| | |||| ||||||||||||||| || | || || || || | ||
Sbjct 39029788 TCAATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTATTCTGCTCA 39029729
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
|| || |||| | | ||||| ||||| || |||||||||||||||||||| |||
Sbjct 39029728 TTTAAAAGGAATTTCATCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCTGAA 39029669
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
||| | |||||||| |||||||| ||||| || |||| | || |||||||||
Sbjct 39029668 CATTCAGCATACCATCATGGTGAGCAAAGTCTTGCTAGTACCATCATTGGAATGGCACAG 39029609
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807
|| ||||| ||||| |||||||| ||| | || | || || || || ||||| ||||
Sbjct 39029608 GATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCAAATGGCCAATTTGGGACTCG 39029550
Score = 123 bits (136), Expect = 5e-23
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628
|| ||||| | |||| ||||||||||||||| || | || || || || | ||
Sbjct 36952927 TCAATTCCTTCCATGGTCGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTTTTCTGCTCA 36952986
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
||||| |||| | | ||||| ||||| || |||||||||||||||||||| ||
Sbjct 36952987 TTCAAAAGGAATTTCATCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCTGAG 36953046
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
||| | |||||||| |||||||| ||||| || |||| | || |||||||||
Sbjct 36953047 CATTCAGCATACCATCATGGTGAGCAAAGTCTTGCTAGTACCATAATCGGAATGGCACAG 36953106
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
|| | ||| ||||| ||||| || ||| | || | || || || || |||||
Sbjct 36953107 GATTTTGTAGGCAGCAACAATATTAACCTTCTCATGCCGAATGGCCAATTTGG 36953159
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 42036189 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42036130
Query 142563 CCCCAC 142568
||||||
Sbjct 42036129 CCCCAC 42036124
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 42036340 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42036281
Query 142563 CCCCAC 142568
||||||
Sbjct 42036280 CCCCAC 42036275
>seq417
Length=28436
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 19868 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19809
Query 142563 CCCCAC 142568
||||||
Sbjct 19808 CCCCAC 19803
>seq4
Length=41978195
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 33907131 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33907190
Query 142563 CCCCAC 142568
||||||
Sbjct 33907191 CCCCAC 33907196
>seq7
Length=52445601
Score = 89.7 bits (98), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||
Sbjct 35397498 GAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 35397439
Query 142560 GAGCCCCAC 142568
|||||||||
Sbjct 35397438 GAGCCCCAC 35397430
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 47972398 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47972457
Query 142563 CCCCAC 142568
||||||
Sbjct 47972458 CCCCAC 47972463
>seq2532
Length=5633
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2951 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3010
Query 142563 CCCCAC 142568
||||||
Sbjct 3011 CCCCAC 3016
>seq10
Length=39358841
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 209761 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 209702
Query 142563 CCCCAC 142568
||||||
Sbjct 209701 CCCCAC 209696
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 1881503 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1881562
Query 142563 CCCCAC 142568
||||||
Sbjct 1881563 CCCCAC 1881568
>seq6
Length=53892272
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 4326956 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4327015
Query 142563 CCCCAC 142568
||||||
Sbjct 4327016 CCCCAC 4327021
>seq3
Length=80079441
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 13754594 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13754535
Query 142563 CCCCAC 142568
||||||
Sbjct 13754534 CCCCAC 13754529
>seq2
Length=64235786
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 46942224 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 46942165
Query 142563 CCCCAC 142568
||||||
Sbjct 46942164 CCCCAC 46942159
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 62367997 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 62367938
Query 142563 CCCCAC 142568
||||||
Sbjct 62367937 CCCCAC 62367932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027771599493791
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |