Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq8 82.4 5e-11 >seq6 Length=53892272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||| || || ||| | || |||| | | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | || | || |||||| || || || || | ||| |||| Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || |||||| ||| |||||||||| || Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || || || |||| | ||| | | ||||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 43309273 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||||||| | || ||| | || Sbjct 13066053 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAAAGCTCA 13065994 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| ||||| ||||| | || | |||| Sbjct 13065993 GACACAATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 13065934 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || || || ||| | || |||| ||||| || Sbjct 13065933 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACCTTGGCTGATTATAAC 13065874 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || || ||| |||| | ||| | |||| || Sbjct 13065873 ATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGAGAGGTGG 13065827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || ||||| |||| |||| | | Sbjct 43309503 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAGACAATTACTTTGGAGGTGGAAAGCTCC 43309562 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||||| || || |||||| | || |||| Sbjct 43309563 GACACCATCGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCGGACCAG 43309622 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||||||||| || || |||||| | ||| | || || || || Sbjct 43309623 CAGAGACTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAAC 43309682 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || |||||||| || |||| Sbjct 43309683 ATCCAGAAAGAGTCTACTCTCCACTTGGT 43309711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || ||||||||| | ||| |||| || || || ||||||||||| ||| Sbjct 43309815 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 43309874 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||| |||||| | || ||||||| ||||| || || |||||||| || ||||| Sbjct 43309875 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCA 43309933 >seq8 Length=74329289 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || |||| || || || || || ||||| || | | Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | || |||||| || || || || | || | | || Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 36266627 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || |||||||||||||| |||||||| || ||| | ||| |||| |||||||| Sbjct 36266628 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 36266687 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| || |||||||| |||| Sbjct 36266688 CATCCAGAAGGAGTCCACTCTTCACTTGGT 36266717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358103190637654