Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq6 107 2e-18 seq8 96.9 3e-15 seq2 93.3 4e-14 seq5 86.0 5e-12 >seq1 Length=40297282 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || |||| || | ||| | ||| || || || ||||||||||||||| Sbjct 18088547 ATGCCGCCACGGAGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCG 18088488 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| || || || || ||| ||||||| | ||| ||||||||| Sbjct 18088487 GCGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGA 18088428 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | || | |||||||| | || Sbjct 18088427 GGGATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCC 18088368 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||||||||| || || || || |||||||| Sbjct 18088367 ACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAATATCTGCAT 18088318 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || |||| || | ||| | ||| || || || ||||||||||||||| Sbjct 18075679 ATACCCCCGCGAAGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCG 18075620 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| |||| |||||||| ||||| ||| Sbjct 18075619 GCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGA 18075560 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | || | |||||||| | || Sbjct 18075559 GGGATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCC 18075500 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | ||| ||||| ||||| || || || || ||||||||| || Sbjct 18075499 ACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 18075446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || || ||||||||| | || || ||| || || || || || Sbjct 18078932 GTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 18078991 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 18078992 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 18079051 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | ||||| || | ||| | || ||||||||||| || Sbjct 18079052 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 18079111 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 18079112 TTCACGAAGATCTGCAT 18079128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || |||| || | ||| | ||| || ||||| || |||||||| ||| Sbjct 18088319 ATACCTCCGCGGAGCCTCAGGACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAGTCG 18088260 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| || || || || ||| ||||||| | ||| ||||| ||| Sbjct 18088259 GCCAGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGA 18088200 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | || || | | ||| Sbjct 18088199 GGGATACCTTCCTTGTCCTGTATCTTGGACTTGACGTTGTCTATTGTATCAGAGCTTTCC 18088140 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||||||||| || || || || |||||||| Sbjct 18088139 ACCTCGAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18088090 >seq6 Length=53892272 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||| ||| || || | ||||||||||||||||||| Sbjct 43309927 GTCGATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGTTTACCA 43309868 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | || |||||||||||||| || |||||||| ||| || || Sbjct 43309867 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTC 43309808 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || || || || | | |||||| || | || | ||| || || || ||||| Sbjct 43309807 ACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTGAGAGTC 43309748 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 43309747 TTCACGAAAATCTGCAT 43309731 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || || |||||||||||||||||| Sbjct 13065140 ATCCCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCG 13065199 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | | | | ||| || ||||| || || ||| | || | ||||| ||||| || Sbjct 13065200 GCCAGACTCCTACCATCCTCGAGTTGCTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGG 13065259 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | |||| ||||| | || Sbjct 13065260 GGAATTCCTTCCTTGTCCTGTATCTTCGCTTTGACGTTATCAATCGTGTCAGAACTCTCC 13065319 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || |||||||| || || || ||||||||||||||| || Sbjct 13065320 ACTTCCAAGGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCATGCCT 13065373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||| |||||| || || || |||||| || || || ||| Sbjct 43309243 GTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTGCCA 43309184 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||||||||| || ||||| ||||| || ||| ||| Sbjct 43309183 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATTTTTGCTTTC 43309124 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || || ||||| | | ||| || || | ||| | || ||||| || || ||| Sbjct 43309123 ACATTATCGACTGTGTCCGAGCTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTT 43309064 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 43309063 TTCACAAAGATTTGCAT 43309047 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || || || |||||||| |||||||| Sbjct 13058420 ATCCCACCACGCAGACGAAGGACGAGATGGAGAGTTGACTCCTTTTGAATATTGTAATCA 13058479 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||| |||||||| || || || | || | ||||||||||| || Sbjct 13058480 GCCAGTGTCCTGCCATCCTCAAGTTGCTTCCCTGCAAAAATCAACCGCTGTTGGTCTGGG 13058539 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| ||| | | || | ||||| | | || Sbjct 13058540 GGGATTCCCTCCTTGTCCTGTATCTTTGCTTTGACATTATCGATCGTGTCAGAGCTCTCC 13058599 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || ||||| || || || |||||||||||||||||| || Sbjct 13058600 ACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAAATCTGCATGCCT 13058653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 || ||| || || | || |||||||| || ||||| ||||| || ||| | ||| Sbjct 13058665 CAGAACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTGCCATC 13058724 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || || || ||||| | ||||| | ||| || || || ||||||||||| ||||| Sbjct 13058725 TTCTAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 13058784 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||| || ||| | | || | |||||| | | || || |||| || | || Sbjct 13058785 CTGAATTTTCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGT 13058844 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| || ||||| || ||||| Sbjct 13058845 TTTCCCAGTAAGAGTCTTGACAAAGATTTGCAT 13058877 >seq8 Length=74329289 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| || || || || | || || || || || ||||||||||| || ||| | | Sbjct 36266726 AGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTA 36266667 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| ||||||||||| ||||| |||| || | || || || || ||||||||||| Sbjct 36266666 CCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGGAATGCCTTCC 36266607 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||| || ||| | | |||| |||||||| | || || |||| || Sbjct 36266606 TTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAAGTG 36266547 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || || || || || ||||| || ||||| Sbjct 36266546 ATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 36266509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || || || || |||||||||||||| || || || ||| |||||||| Sbjct 36266940 ATGTAGAGTTGACTCCTTCTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTCAAGTTG 36266881 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || || ||| | || | | ||| || || || ||||||||||||||||| ||||| Sbjct 36266880 CTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGTATCTT 36266821 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 ||| | | |||| ||| || | | || || |||| || | || || || || Sbjct 36266820 AGCTTTGACATTATCAATGGTATCCGAGCTCTCAACTTCCAAAGTTATGGTCTTCCCAGT 36266761 Query 114359 CAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || ||||||||||||||| || Sbjct 36266760 AAGGGTCTTGACAAAAATCTGCATGCCT 36266733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 ||||| || || | | ||||| || | || || ||||| |||||||| |||||| | Sbjct 36267191 CCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCC 36267132 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | |||||| ||||| || || || | || || | ||| ||||||||||| Sbjct 36267131 AGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGG 36267072 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || || || ||||| || | | || | |||||| | ||| || Sbjct 36267071 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACC 36267012 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || ||||||||||| || |||||||||||||| Sbjct 36267011 TCAAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 36266965 >seq2 Length=64235786 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || || || || || || Sbjct 58015739 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 58015680 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 58015679 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 58015620 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| | || ||||| || | ||| | ||| || || ||||| || Sbjct 58015619 ACATTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTTATCGTCTTCCCCGTCAGGGTC 58015560 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || |||||||||||| Sbjct 58015559 TTCACGAAGATCTGCATGGCT 58015539 >seq5 Length=74729908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| | || || || || || || || || Sbjct 70522963 GTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 70522904 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 70522903 GCGAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 70522844 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || || | ||| | || ||||||||||| || Sbjct 70522843 ACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 70522784 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 70522783 TTGACAAAGATCTGCAT 70522767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420109048959012