Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 399 4e-106 >seq9 Length=39018107 Score = 399 bits (442), Expect = 4e-106 Identities = 613/867 (71%), Gaps = 18/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| | | |||||| ||||||||| ||||| || |||| |||||||||| Sbjct 26348451 ATCCAGTACCCGCAGATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCTGGACCGCC 26348392 Query 42345 GAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAG----TCACTGTCTGAGAACG 42399 |||||| | ||||| || ||||| | ||| ||||||| |||| | | | || || Sbjct 26348391 GAGGAGGTCGACCTCTCCCAGGACCTCCGCCA-CTGGGAGGGCCTCACCGACGGCGAGCG 26348333 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | ||| ||| || | || ||||||||||||||||| |||||||| ||| | Sbjct 26348332 CCAC----TTCGTCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCG 26348277 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||||||| ||| | | |||||||| ||||| ||| || ||||| ||| |||||||| Sbjct 26348276 AGAACCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTACG 26348217 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 |||||||||| ||||| |||||| | ||||| ||| ||||| | || || | || | Sbjct 26348216 GCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGACCT 26348157 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 || || ||| ||| |||| || | || ||| ||| | || || | || | Sbjct 26348156 ACGTCAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCGGCCG 26348097 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || ||||| |||||||| ||| ||||||||| | || | | |||| | Sbjct 26348096 TCGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGG---CGGGGAGTCCTTCGCGG 26348040 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || | ||||| || ||| ||||| ||||||||||| ||| |||| | ||| Sbjct 26348039 AGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCCA 26347980 Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||||||||| || || ||||| || ||||||||||||||||| |||||| Sbjct 26347979 TCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCT 26347920 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | |||||||| || || | ||||| ||||||||||| | |||| | || || Sbjct 26347919 CTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCG---CTGCTGCGGA 26347863 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 ||||||| |||||||||| || ||| | ||||||||| || |||||| || Sbjct 26347862 ACAAGCCGAGCGAGGAGCGGGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGG 26347803 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 ||||| || | ||||| ||||| ||||||| || |||||| |||||| ||| || Sbjct 26347802 AGTTCGTCTGCGACGCGCTG-CCGTGCGCCCTGGTTGGGATGAACAGCGACCTGATGGGC 26347744 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| ||||||||||| || || || | | || | || | ||| Sbjct 26347743 CAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGGCGCGCTCGGCTGCGGCAAGGTGTAC 26347684 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || | || ||| ||||||| |||||| ||||||| || |||| ||||||||||| Sbjct 26347683 GACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTC 26347624 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| |||| || |||||| Sbjct 26347623 TTCGAGAAGCGGGTCGGGGAGTACCAG 26347597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944280757207760