Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq2340 138 3e-28 >seq2340 Length=6312 Score = 138 bits (152), Expect = 3e-28 Identities = 317/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 33331 GCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAATTCCGGGCCGTTGTAGCCTTCC 33390 ||||| |||||||||||||| ||||||||| | | || | ||||||||| || Sbjct 4449 GCGCGCTCGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTGTACAGCTCG 4508 Query 33391 GCGAACGTCGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCGCGACG 33450 |||| | | ||||| ||| |||| || || |||| | | |||||| ||| | Sbjct 4509 GCGACCTTGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCGGCCTCGATG 4568 Query 33451 TACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCAGCTCCATACGGGACACGAATTCG 33510 | || || || || || || ||||||| ||||| || |||| || ||||| || Sbjct 4569 AAGCGGACAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCGACGAAGTCC 4628 Query 33511 TCGACGCTCGC-GTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCGCCCCA 33569 | ||| ||| ||| || || || | |||||| ||| ||||||||||||| |||||||| Sbjct 4629 TGCACG-TCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAGGCGCCCCA 4687 Query 33570 GCTCGCGGACTCGTAAGCGGATGCCGCATCGA--TG-CGCGCCGCGGTGTCGAGCCGCAC 33626 ||| || ||||| |||| | |||||| || || ||| || |||| ||| Sbjct 4688 GCTGGCCGACTCCAGGGCGGCGGTGTCATCGAGCTGACGGGCCTGGG---CGAGACGCTG 4744 Query 33627 GTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGACGCCCGGCCATCG 33686 | ||||||| |||||| |||||||||| ||| || ||||| | | | || Sbjct 4745 ATGCTCGGCGGTGCCGCCGATGTAGCCGCCGGCCTTTGGATTGACCAGGGCAGG----GT 4800 Query 33687 TGCGGCGGCAGCGTCCGCCGCTTCCCTGCCGACATTCGCGACGAGCCGCTGATACATGAC 33746 || ||||| || ||| | || ||| || ||| | |||||||| Sbjct 4801 TGAGGCGG--------GCAAGTTCGTCGGCGCGGGGCGCCTGCAGGCGCCGGTACATGAC 4852 Query 33747 GTGCCGCTCGAACAGAATCTTCGGCCGGCCGTCGTCCAGAAAGCCGACGCC 33797 || ||||||||||| ||| |||| ||||| |||||||| ||| |||| Sbjct 4853 ATGACGCTCGAACAGGATCACCGGCTTGCCGTTATCCAGAAACCCG-CGCC 4902 Score = 105 bits (116), Expect = 2e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 34812 AGCACCACGCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTCAACCGTGCCC 34871 ||||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||| ||| Sbjct 5627 AGCACGGCGCCGTGGTCGGCCAGGCCAGGGTTGGCATCGAGCACCGCTTCGACCACGCCG 5686 Query 34872 GCCGTGCTGCCGTAGTGCCGCCAGCACAGCGCGTCGAGCGTCTCGCCTTGC 34922 ||||||| ||||||||||||||||||||| || |||| || ||| |||| Sbjct 5687 GCCGTGCGGCCGTAGTGCCGCCAGCACAGGGCATCGACGGTGTCGTGTTGC 5737 Score = 87.8 bits (96), Expect = 4e-13 Identities = 217/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 28728 CTCCGGATCGGCCGCCGTGACCACGAGCCGCTCGACATCGAACAGCGCCGCGATGTGTTC 28787 || ||| | ||||||| | || || |||| ||| | ||| |||||| || || Sbjct 1344 CTGCGGCTGGGCCGCCTGAATGACCAGGCGCTTGACGTTGAAGTTGCCCGCGACCTGGTC 1403 Query 28788 GAGCGTCGT-GCCGCGCGCATAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTGATGAGCT 28846 || ||||| | ||| || || ||||| || || ||| | ||||||| ||| Sbjct 1404 CAG-GTCGTTGTCGCCGGCCGAGCTGAGCATCACCGCGAGCGACGCTTCGTTGACCCGCT 1462 Query 28847 GCCGCAGCAGGACTTCGCGATAGGCGTTCTCCTGAAGGACGCGCGTCACGGGCTCGGATT 28906 | ||||| | | ||| || |||||||||||||| || | || | |||||| || | Sbjct 1463 GACGCAGGATCATTTCCCGGTAGGCGTTCTCCTGCAGCAACTTGGTGATGGGCTCCGACT 1522 Query 28907 CGAGCGCGAG-CGTCGCGGCGATTTCCGCCTGGTGCTCGGGCGGATACAGCGACACGAGG 28965 | ||| | || ||| |||||||| || ||||| | || | || | || ||| Sbjct 1523 CCAGCTCAAGGCGT-GCGGCGATCTCGGCCTGCTCATCCGCAGGCCATAGGCTGACGGCA 1581 Query 28966 CGCGCCTTGCGCTCGGCGAACAGCGTCTCGAAGTCGAGCGGGTCGACGATGTCCGGCGCG 29025 |||||||||||||||| | | |||||||||| | | ||||| | | ||||||| Sbjct 1582 TAAGCCTTGCGCTCGGCGAGGATCTGTTCGAAGTCGATCTGCTCGACCACCTGCGGCGCG 1641 Query 29026 GGGAGCTGCGAAAGATCGATGGGC 29049 || ||||| || ||||| ||| Sbjct 1642 GGCAGCTGACTGAGGTCGATAGGC 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114242882908986